RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 SFR1Q86XK3 245 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 BRIP1Q9BX63 1249 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 GCOM2Q9BZD3 368 aaPredicted RBP16.72■□□□□ 0.27
PTPRF-201ENST00000359947 SLC13A4Q9UKG4 626 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.72■□□□□ 0.271e-7■■■□□ 16
PTPRF-201ENST00000359947 NFKBIAP25963 317 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 DDX53Q86TM3 631 aaKnown RBP16.72■□□□□ 0.27
PTPRF-201ENST00000359947 HAUS8Q9BT25 410 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 RWDD2AQ9UIY3 292 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 HACL1Q9UJ83 578 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 POTEB3A0JP26 581 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 POTECB2RU33 542 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 EVI5O60447 810 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 POTEBQ6S5H4 581 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 GINM1Q9NU53 330 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 SUCLA2Q9P2R7 463 aaPredicted RBP16.72■□□□□ 0.27
PTPRF-201ENST00000359947 MAGI2Q86UL8 1455 aa16.72■□□□□ 0.27
PTPRF-201ENST00000359947 PI4K2BG5E9Z4 385 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 CCDC38Q502W7 563 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 KIAA1755Q5JYT7 1200 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 LARGE1O95461 756 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 MAP3K21Q5TCX8 1036 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 VCX3AQ9NNX9 186 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 POTEFA5A3E0 1075 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 A6NNZ2 444 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 ZNF853P0CG23 659 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 POTEIP0CG38 1075 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 AP3B2Q13367 1082 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 TUBB8Q3ZCM7 444 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 POTEGQ6S5H5 508 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 POTEEQ6S8J3 1075 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 LINC00301Q8NCQ3 95 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 HEMGNQ9BXL5 484 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 GOLGA8MH3BSY2 632 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 M0QYV0 167 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 TXNP10599 105 aaKnown RBP16.71■□□□□ 0.27
PTPRF-201ENST00000359947 NCF2P19878 526 aaPredicted RBP16.71■□□□□ 0.27
PTPRF-201ENST00000359947 ARHGAP25P42331 645 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 CC2D1AQ6P1N0 951 aaPredicted RBP16.71■□□□□ 0.27
PTPRF-201ENST00000359947 RUNDC3BQ96NL0 473 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 PIN4Q9Y237 131 aaKnown RBP16.71■□□□□ 0.27
PTPRF-201ENST00000359947 MAP3K4Q9Y6R4 1608 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 PPARGP37231 505 aaPredicted RBP16.71■□□□□ 0.27
PTPRF-201ENST00000359947 MCPH1Q8NEM0 835 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 KIF12Q96FN5 646 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 SH2D3AQ9BRG2 576 aa16.71■□□□□ 0.27
PTPRF-201ENST00000359947 A0A1W2PQ27 194 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 A0A1W2PQ64 194 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 A0A1W2PQD8 194 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 ANGEL2Q5VTE6 544 aaKnown RBP16.7■□□□□ 0.26
PTPRF-201ENST00000359947 STAG1Q8WVM7 1258 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 MT-ND3P03897 115 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 SERPING1P05155 500 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 PLS3P13797 630 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 DCP1AQ9NPI6 582 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-201ENST00000359947 TBC1D22BQ9NU19 505 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 AK9Q5TCS8 1911 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 GOLGA8KD6RF30 607 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 ADRA2BP18089 450 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 GRIK1P39086 918 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 CLNS1AP54105 237 aaKnown RBP16.7■□□□□ 0.26
PTPRF-201ENST00000359947 ACBD5Q5T8D3 534 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-201ENST00000359947 PCSK1NQ9UHG2 260 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 NOP14P78316 857 aaKnown RBP16.7■□□□□ 0.26
PTPRF-201ENST00000359947 IL9RQ01113 521 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 SLC7A5Q01650 507 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 TMTC3Q6ZXV5 915 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 KDELC2Q7Z4H8 507 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 NDST4Q9H3R1 872 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 ADAM22Q9P0K1 906 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 FARP1Q9Y4F1 1045 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-201ENST00000359947 DRP2Q13474 957 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 ASIC4Q96FT7 647 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 EDEM3Q9BZQ6 932 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 RASSF4Q9H2L5 321 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 CPSF2Q9P2I0 782 aaKnown RBP16.7■□□□□ 0.26
PTPRF-201ENST00000359947 ANAPC7Q9UJX3 599 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 PCDHA13Q9Y5I0 950 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 LCP1P13796 627 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 KLC3Q6P597 504 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 DGKHQ86XP1 1220 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 CERKQ8TCT0 537 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 SNX19Q92543 992 aa16.7■□□□□ 0.26
PTPRF-201ENST00000359947 INPP1P49441 399 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 MRPS25P82663 173 aaKnown RBP16.69■□□□□ 0.26
PTPRF-201ENST00000359947 ALCAMQ13740 583 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 INTS9Q9NV88 658 aaKnown RBP16.69■□□□□ 0.26
PTPRF-201ENST00000359947 ERVK-7P63135 1459 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 DYNC1LI2O43237 492 aaPredicted RBP16.69■□□□□ 0.26
PTPRF-201ENST00000359947 SCARF1Q14162 830 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 PPP1R13BQ96KQ4 1090 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 SAMD9LQ8IVG5 1584 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 PGRMC1O00264 195 aaKnown RBP16.69■□□□□ 0.26
PTPRF-201ENST00000359947 IPO5O00410 1097 aaKnown RBP16.69■□□□□ 0.26
PTPRF-201ENST00000359947 SRGAP2O75044 1071 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 DNAJC12Q9UKB3 198 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 OVOS2A0A0G2JMS6 1433 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 OVOS2A0A0J9YW53 1432 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 OVOS2Q6IE36 1432 aa16.69■□□□□ 0.26
PTPRF-201ENST00000359947 MAP3K7O43318 606 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms