RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 JRKLQ9Y4A0 524 aa10.9□□□□□ -0.66
CLIP1-202ENST00000358808 BLMP54132 1417 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-202ENST00000358808 EXOC1LA0A1B0GW35 172 aa10.9□□□□□ -0.67
CLIP1-202ENST00000358808 HSPA1AP0DMV8 641 aaKnown RBP10.9□□□□□ -0.67
CLIP1-202ENST00000358808 HSPA1BP0DMV9 641 aaKnown RBP10.9□□□□□ -0.67
CLIP1-202ENST00000358808 SLCO1A2P46721 670 aa10.9□□□□□ -0.67
CLIP1-202ENST00000358808 OPTNQ96CV9 577 aa10.9□□□□□ -0.67
CLIP1-202ENST00000358808 OSBPL10Q9BXB5 764 aa10.9□□□□□ -0.67
CLIP1-202ENST00000358808 SGSM2O43147 1006 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 GFPT2O94808 682 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 TTLL1O95922 423 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 SLC16A2P36021 539 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 IL6STP40189 918 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-202ENST00000358808 STAT2P52630 851 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 PSMC1P62191 440 aaKnown RBP10.89□□□□□ -0.67
CLIP1-202ENST00000358808 RBM6P78332 1123 aaKnown RBP10.89□□□□□ -0.67
CLIP1-202ENST00000358808 APBA1Q02410 837 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 CCDC157Q569K6 752 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 TMEM106CQ9BVX2 250 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 KLC2Q9H0B6 622 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.89□□□□□ -0.67
CLIP1-202ENST00000358808 BBOX1O75936 387 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 CENPAP49450 140 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 PMS1P54277 932 aaKnown RBP10.89□□□□□ -0.67
CLIP1-202ENST00000358808 LRRC41Q15345 812 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 ASPRV1Q53RT3 343 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 PPP6R3Q5H9R7 873 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-202ENST00000358808 RTKN2Q8IZC4 609 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 LARP4BQ92615 738 aaKnown RBP10.89□□□□□ -0.67
CLIP1-202ENST00000358808 CYTH2Q99418 400 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 HOXD10P28358 340 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 KCNQ4P56696 695 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 UBE3AQ05086 875 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 MIGA2Q7L4E1 593 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 COA7Q96BR5 231 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 HAUS4Q9H6D7 363 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 ERBB4Q15303 1308 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 TULP4Q9NRJ4 1543 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 ARHGAP10A1A4S6 786 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 ESRRAP11474 423 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-202ENST00000358808 KRT72Q14CN4 511 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 MEI1Q5TIA1 1274 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 TWF2Q6IBS0 349 aaKnown RBP10.89□□□□□ -0.67
CLIP1-202ENST00000358808 C16orf87Q6PH81 154 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 ARHGEF25Q86VW2 580 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 ERICH1Q86X53 443 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 EXOC4Q96A65 974 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 CHAMP1Q96JM3 812 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 SP110Q9HB58 689 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 SEL1LQ9UBV2 794 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 GTF2H3Q13889 308 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 LRRC24Q50LG9 513 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 PYROXD1Q8WU10 500 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 CCDC17Q96LX7 622 aa10.89□□□□□ -0.67
CLIP1-202ENST00000358808 NGRNQ9NPE2 291 aaKnown RBP10.89□□□□□ -0.67
CLIP1-202ENST00000358808 DDX5P17844 614 aaKnown RBP10.88□□□□□ -0.67
CLIP1-202ENST00000358808 BRD2P25440 801 aaKnown RBP10.88□□□□□ -0.67
CLIP1-202ENST00000358808 PTCH1Q13635 1447 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 LRRC23Q53EV4 343 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-202ENST00000358808 CIAPIN1Q6FI81 312 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 GRAMD4Q6IC98 578 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 TTC8Q8TAM2 541 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 KIF24Q5T7B8 1368 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 LMNAP02545 664 aaKnown RBP10.88□□□□□ -0.67
CLIP1-202ENST00000358808 RAD51Q06609 339 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 IFT88Q13099 833 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 MED21Q13503 144 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 CUL1Q13616 776 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 SYDE2Q5VT97 1194 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 MMS22LQ6ZRQ5 1243 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 ACAD11Q709F0 780 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 CRLF3Q8IUI8 442 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 PPP2R3CQ969Q6 453 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 TRIM54Q9BYV2 358 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 MAGEB5Q9BZ81 275 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 GCNT4Q9P109 453 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 AATKQ6ZMQ8 1374 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 GOLGA8IPA6NC78 632 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 GOLGA8JA6NMD2 632 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 AARSP49588 968 aaKnown RBP eCLIP10.88□□□□□ -0.67
CLIP1-202ENST00000358808 CARSP49589 748 aaKnown RBP10.88□□□□□ -0.67
CLIP1-202ENST00000358808 GPATCH4Q5T3I0 446 aaKnown RBP10.88□□□□□ -0.67
CLIP1-202ENST00000358808 E4F1Q66K89 784 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-202ENST00000358808 CC2D2BQ6DHV5 1058 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 ADCK2Q7Z695 626 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 ACAP3Q96P50 834 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 CCDC151A5D8V7 595 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 H0YC42 278 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 COPB1P53618 953 aaKnown RBP10.88□□□□□ -0.67
CLIP1-202ENST00000358808 POLE2P56282 527 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 PTGDRQ13258 359 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 PKN3Q6P5Z2 889 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 GAS2L3Q86XJ1 694 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 CATSPER3Q86XQ3 398 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 TCP11Q8WWU5 503 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 EEF2KMTQ96G04 330 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 KDM4CQ9H3R0 1056 aa10.88□□□□□ -0.67
CLIP1-202ENST00000358808 GPBP1L1Q9HC44 474 aaPredicted RBP10.88□□□□□ -0.67
CLIP1-202ENST00000358808 COPG1Q9Y678 874 aaKnown RBP10.88□□□□□ -0.67
CLIP1-202ENST00000358808 KRT7P08729 469 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms