RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 PPEF1O14829 653 aaPredicted RBP24.32■■□□□ 1.48
TRIM28-202ENST00000341753 PAEPP09466 180 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 C10orf76Q5T2E6 689 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 FOXR2Q6PJQ5 311 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 CHMP6Q96FZ7 201 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 DONSONQ9NYP3 566 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 CHN1P15882 459 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 CASP4P49662 377 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 C3orf20Q8ND61 904 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 IKZF4Q9H2S9 585 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 SLITRK6Q9H5Y7 841 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 KCNQ5Q9NR82 932 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 PCDHAC2Q9Y5I4 1007 aa24.32■■□□□ 1.48
TRIM28-202ENST00000341753 SPDYE3A6NKU9 549 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 RPSAP08865 295 aaKnown RBP24.31■■□□□ 1.48
TRIM28-202ENST00000341753 SEPT2Q15019 361 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 SHROOM1Q2M3G4 852 aaPredicted RBP24.31■■□□□ 1.48
TRIM28-202ENST00000341753 MTFR1LQ9H019 292 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 GAKO14976 1311 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 BUB1BO60566 1050 aaPredicted RBP24.31■■□□□ 1.48
TRIM28-202ENST00000341753 MED24O75448 989 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 AKAP3O75969 853 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 GALCP54803 685 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 PPP1R7Q15435 360 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 HIBCHQ6NVY1 386 aaPredicted RBP24.31■■□□□ 1.48
TRIM28-202ENST00000341753 RASGEF1CQ8N431 466 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 ERVK-5Q9HDB9 667 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 SUCLA2Q9P2R7 463 aaPredicted RBP24.31■■□□□ 1.48
TRIM28-202ENST00000341753 BAIAP2L1Q9UHR4 511 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 PPP1R9AQ9ULJ8 1098 aa24.31■■□□□ 1.48
TRIM28-202ENST00000341753 FAM196BA6NMK8 535 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 XRCC5P13010 732 aaKnown RBP24.3■■□□□ 1.48
TRIM28-202ENST00000341753 HSPA1LP34931 641 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 CACNB3P54284 484 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 PSMC6P62333 389 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 DCAF12L1Q5VU92 463 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 MSL1Q68DK7 614 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 CEP83Q9Y592 693 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 UBR3Q6ZT12 1888 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 CLIC2O15247 247 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 RAD21O60216 631 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 PPP1R12BO60237 982 aaPredicted RBP24.3■■□□□ 1.48
TRIM28-202ENST00000341753 MMEP08473 750 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 PLCG2P16885 1265 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 ERMARDQ5T6L9 678 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 EP400NLQ6ZTU2 488 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 GCNT4Q9P109 453 aa24.3■■□□□ 1.48
TRIM28-202ENST00000341753 IGSF9BQ9UPX0 1349 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 HOXD13P35453 343 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 PLTPP55058 493 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 PABPC4Q13310 644 aaKnown RBP eCLIP24.29■■□□□ 1.489e-9■■■■□ 20
TRIM28-202ENST00000341753 LACTB2Q53H82 288 aaPredicted RBP24.29■■□□□ 1.48
TRIM28-202ENST00000341753 AADACL2Q6P093 401 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 SLFN11Q7Z7L1 901 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 SFR1Q86XK3 245 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 GLYCTKQ8IVS8 523 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 TLCD1Q96CP7 247 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 FAM129AQ9BZQ8 928 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 JMJD4Q9H9V9 463 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 FAM114A2Q9NRY5 505 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 SNX24Q9Y343 169 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 BZW2Q9Y6E2 419 aaKnown RBP24.29■■□□□ 1.48
TRIM28-202ENST00000341753 USP17L15C9J2P7 530 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 USP17L13C9JLJ4 530 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 USP17L11C9JVI0 530 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 USP17L18D6R9N7 530 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 USP17L22D6RA61 530 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 USP17L17D6RBQ6 530 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 USP17L19D6RCP7 530 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 USP17L20D6RJB6 530 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 IFI35P80217 286 aaPredicted RBP24.29■■□□□ 1.48
TRIM28-202ENST00000341753 USP17L24Q0WX57 530 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 XRCC4Q13426 336 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 USP17L6PQ6QN14 398 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 ADGRF4Q8IZF3 695 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 NT5C3AQ9H0P0 336 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 VEZTQ9HBM0 779 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 SIX2Q9NPC8 291 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 MTMR4Q9NYA4 1195 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 AMFRQ9UKV5 643 aa24.29■■□□□ 1.48
TRIM28-202ENST00000341753 HOXA10P31260 410 aaPredicted RBP24.28■■□□□ 1.48
TRIM28-202ENST00000341753 PSEN1P49768 467 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 POU5F1Q01860 360 aaKnown RBP24.28■■□□□ 1.48
TRIM28-202ENST00000341753 KCNA1Q09470 495 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 EPHA7Q15375 998 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 CCDC197Q8NCU1 140 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 LNX1Q8TBB1 728 aaPredicted RBP24.28■■□□□ 1.48
TRIM28-202ENST00000341753 HES6Q96HZ4 224 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 EPB41L4BQ9H329 900 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 AZI2Q9H6S1 392 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 QTRT2Q9H974 415 aaKnown RBP24.28■■□□□ 1.48
TRIM28-202ENST00000341753 GGT7Q9UJ14 662 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 C21orf2O43822 256 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 ELF3P78545 371 aaPredicted RBP24.28■■□□□ 1.48
TRIM28-202ENST00000341753 EDRF1Q3B7T1 1238 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 ACCSLQ4AC99 568 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 FAM133BQ5BKY9 247 aaKnown RBP24.28■■□□□ 1.48
TRIM28-202ENST00000341753 ZFPM1Q8IX07 1006 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 LMBR1Q8WVP7 490 aa24.28■■□□□ 1.48
TRIM28-202ENST00000341753 TCP11Q8WWU5 503 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms