RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 POTEIP0CG38 1075 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 ERFEQ4G0M1 354 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 LMBRD2Q68DH5 695 aaPredicted RBP9.33□□□□□ -0.92
RTN3-202ENST00000339997 POTEGQ6S5H5 508 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 POTEEQ6S8J3 1075 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 ATP6V1E2Q96A05 226 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 ARL8AQ96BM9 186 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 SPATA17Q96L03 361 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 TRIM56Q9BRZ2 755 aaKnown RBP9.33□□□□□ -0.92
RTN3-202ENST00000339997 TRAIPQ9BWF2 469 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 CELF4Q9BZC1 486 aaKnown RBP9.33□□□□□ -0.92
RTN3-202ENST00000339997 KMT5AQ9NQR1 393 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 CNOT8Q9UFF9 292 aaKnown RBP9.33□□□□□ -0.92
RTN3-202ENST00000339997 PRDM15P57071 1507 aaPredicted RBP9.33□□□□□ -0.92
RTN3-202ENST00000339997 A6NJR5 290 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 MEFVO15553 781 aaPredicted RBP9.32□□□□□ -0.92
RTN3-202ENST00000339997 PMS2P54278 862 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 RWDD2BP57060 319 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 ANKRD40Q6AI12 368 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 OR6B2Q6IFH4 312 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 PDIK1LQ8N165 341 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 PPM1NQ8N819 430 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 ENAHQ8N8S7 591 aaPredicted RBP9.32□□□□□ -0.92
RTN3-202ENST00000339997 CHURC1Q8WUH1 139 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 CDKL2Q92772 493 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 RBM12Q9NTZ6 932 aaKnown RBP9.32□□□□□ -0.92
RTN3-202ENST00000339997 WARS2Q9UGM6 360 aaKnown RBP9.32□□□□□ -0.92
RTN3-202ENST00000339997 ZFP69BQ9UJL9 534 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 KIDINS220Q9ULH0 1771 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 ASXL2Q76L83 1435 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 RPAP1Q9BWH6 1393 aaPredicted RBP9.32□□□□□ -0.92
RTN3-202ENST00000339997 ATRXP46100 2492 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 MAP3K15Q6ZN16 1313 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 CCDC78A2IDD5 438 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 SRGAP2CP0DJJ0 459 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 MARK3P27448 753 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 KCNJ1P48048 391 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 IRAK1P51617 712 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 NOP14P78316 857 aaKnown RBP9.32□□□□□ -0.92
RTN3-202ENST00000339997 OCRLQ01968 901 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 LONRF1Q17RB8 773 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 ABCB5Q2M3G0 1257 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 RABGAP1LQ5R372 815 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 RSBN1LQ6PCB5 846 aaPredicted RBP9.32□□□□□ -0.92
RTN3-202ENST00000339997 TC2NQ8N9U0 490 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 SLC26A7Q8TE54 656 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 CHMP6Q96FZ7 201 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.32□□□□□ -0.92
RTN3-202ENST00000339997 NUB1Q9Y5A7 615 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 MYOM2P54296 1465 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 USP17L5A8MUK1 530 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 TNNC2P02585 160 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 POLR2BP30876 1174 aaKnown RBP9.32□□□□□ -0.92
RTN3-202ENST00000339997 NCAPHQ15003 741 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 HSP90AA5PQ58FG0 334 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 THNSL1Q8IYQ7 743 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 C4orf33Q8N1A6 199 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 CSRNP1Q96S65 589 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 PARVGQ9HBI0 331 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 BCAP29Q9UHQ4 241 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 TSR3Q9UJK0 312 aaKnown RBP9.32□□□□□ -0.92
RTN3-202ENST00000339997 BAG5Q9UL15 447 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 NPHP3-ACAD11A0A0J9YXS1 232 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 MCF2LO15068 1137 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 RAD17O75943 681 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 SEC24DO94855 1032 aaPredicted RBP9.32□□□□□ -0.92
RTN3-202ENST00000339997 TDP2O95551 362 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 ESRRGP62508 458 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 BTKQ06187 659 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 NLRP10Q86W26 655 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 STAG2Q8N3U4 1231 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 IWS1Q96ST2 819 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 RNF14Q9UBS8 474 aa9.32□□□□□ -0.92
RTN3-202ENST00000339997 ZRANB2O95218 330 aaKnown RBP eCLIP9.31□□□□□ -0.92
RTN3-202ENST00000339997 FTLP02792 175 aaPredicted RBP9.31□□□□□ -0.92
RTN3-202ENST00000339997 CPA2P48052 419 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 ADCY2Q08462 1091 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 CUL1Q13616 776 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 SPARCL1Q14515 664 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 CYTH1Q15438 398 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 ANKMY2Q8IV38 441 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 TRIM59Q8IWR1 403 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 PIK3R5Q8WYR1 880 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 AK8Q96MA6 479 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 SHCBP1LQ9BZQ2 653 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 VPS11Q9H270 941 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 SERPINB13Q9UIV8 391 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 IVNS1ABPQ9Y6Y0 642 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 PIK3C2BO00750 1634 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 PIK3R2O00459 728 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 PLEKP08567 350 aaPredicted RBP9.31□□□□□ -0.92
RTN3-202ENST00000339997 SETSIPP0DME0 302 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 CRKLP46109 303 aaKnown RBP9.31□□□□□ -0.92
RTN3-202ENST00000339997 RNF207Q6ZRF8 634 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 CLEC10AQ8IUN9 316 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 ZBED8Q8IZ13 594 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 ZNF473Q8WTR7 871 aaKnown RBP9.31□□□□□ -0.92
RTN3-202ENST00000339997 TRIM55Q9BYV6 548 aa9.31□□□□□ -0.92
RTN3-202ENST00000339997 TAF1DQ9H5J8 278 aaPredicted RBP9.31□□□□□ -0.92
RTN3-202ENST00000339997 ARHGEF10O15013 1369 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms