RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 FARP2O94887 1054 aaPredicted RBP14.74□□□□□ -0.05
HMGB1-202ENST00000339872 PLS3P13797 630 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 KRT9P35527 623 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 CST9Q5W186 159 aa14.74□□□□□ -0.05
HMGB1-202ENST00000339872 NAA15Q9BXJ9 866 aaKnown RBP14.74□□□□□ -0.05
HMGB1-202ENST00000339872 SOCS7O14512 581 aa14.73□□□□□ -0.05
HMGB1-202ENST00000339872 STBD1O95210 358 aa14.73□□□□□ -0.05
HMGB1-202ENST00000339872 RPL13P26373 211 aaKnown RBP14.73□□□□□ -0.05
HMGB1-202ENST00000339872 NEDD9Q14511 834 aa14.73□□□□□ -0.05
HMGB1-202ENST00000339872 TRIM59Q8IWR1 403 aa14.73□□□□□ -0.05
HMGB1-202ENST00000339872 NUP58Q9BVL2 599 aa14.73□□□□□ -0.05
HMGB1-202ENST00000339872 ZNF302Q9NR11 478 aa14.73□□□□□ -0.05
HMGB1-202ENST00000339872 LUC7L2Q9Y383 392 aaKnown RBP14.73□□□□□ -0.05
HMGB1-202ENST00000339872 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.73□□□□□ -0.05
HMGB1-202ENST00000339872 SOWAHDA6NJG2 315 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 PPP1R37O75864 691 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 ATG7O95352 703 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 GGPS1O95749 300 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 TGFB3P10600 412 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 GCLCP48506 637 aaPredicted RBP14.72□□□□□ -0.05
HMGB1-202ENST00000339872 HUNKP57058 714 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 LY6KQ17RY6 165 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 HS2ST1Q7LGA3 356 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 FBXO16Q8IX29 292 aaPredicted RBP14.72□□□□□ -0.05
HMGB1-202ENST00000339872 PPP1R13BQ96KQ4 1090 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 TTYH3Q9C0H2 523 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 CAPN11Q9UMQ6 739 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 MAPTP10636 758 aaKnown RBP14.72□□□□□ -0.05
HMGB1-202ENST00000339872 PEX3P56589 373 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 XKR3Q5GH77 459 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 SYCP3Q8IZU3 236 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 RETREG2Q8NC44 543 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 STRA6Q9BX79 667 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 GBP3Q9H0R5 595 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 ARMCX3Q9UH62 379 aaPredicted RBP14.72□□□□□ -0.05
HMGB1-202ENST00000339872 SIK3Q9Y2K2 1263 aa14.72□□□□□ -0.05
HMGB1-202ENST00000339872 R3HCC1Q9Y3T6 440 aaKnown RBP14.72□□□□□ -0.05
HMGB1-202ENST00000339872 RASSF10A6NK89 507 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 AKAP3O75969 853 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 ARIH2O95376 493 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 ITGBL1O95965 494 aaPredicted RBP14.71□□□□□ -0.05
HMGB1-202ENST00000339872 EPB41P11171 864 aaKnown RBP14.71□□□□□ -0.05
HMGB1-202ENST00000339872 ALCAMQ13740 583 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 MTF1Q14872 753 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 MTERF2Q49AM1 385 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 TOGARAM2Q6ZUX3 1019 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 FRMD5Q7Z6J6 570 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 CCDC155Q8N6L0 562 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 PARK7Q99497 189 aaKnown RBP14.71□□□□□ -0.05
HMGB1-202ENST00000339872 PTPN18Q99952 460 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 MLXIPQ9HAP2 919 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 CYP26B1Q9NR63 512 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 MORF4L1Q9UBU8 362 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 MAFBQ9Y5Q3 323 aaPredicted RBP14.71□□□□□ -0.05
HMGB1-202ENST00000339872 SLC16A3O15427 465 aaKnown RBP14.71□□□□□ -0.05
HMGB1-202ENST00000339872 CCP110O43303 1012 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 TNNT1P13805 278 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 CASP4P49662 377 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 PTPN14Q15678 1187 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 CHADLQ6NUI6 762 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 METTL7BQ6UX53 244 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 MMRN2Q9H8L6 949 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 AGPAT3Q9NRZ7 376 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 FAM207AQ9NSI2 230 aaPredicted RBP14.71□□□□□ -0.05
HMGB1-202ENST00000339872 AGPAT5Q9NUQ2 364 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 DDX41Q9UJV9 622 aaKnown RBP14.71□□□□□ -0.05
HMGB1-202ENST00000339872 FAM184BQ9ULE4 1060 aa14.71□□□□□ -0.05
HMGB1-202ENST00000339872 GSTTP1A0A1W2PQM5 241 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 SLC16A4O15374 487 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 DGAT1O75907 488 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 OATP04181 439 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 FECHP22830 423 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 ADORA2AP29274 412 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 SOX10P56693 466 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 NFIL3Q16649 462 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 FIGNQ5HY92 759 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 KCNV1Q6PIU1 500 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 HAUS6Q7Z4H7 955 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 OR8K1Q8NGG5 319 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 KIFAP3Q92845 792 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 DNAJC7Q99615 494 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 DESI2Q9BSY9 194 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 PPP2R2CQ9Y2T4 447 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 IVNS1ABPQ9Y6Y0 642 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 IGKV6D-21A0A0A0MT36 114 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 ASB14A6NK59 587 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 CCDC169A6NNP5 214 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 ZSCAN12O43309 604 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 ATP4AP20648 1035 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 CYP2J2P51589 502 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 NCKAP1LP55160 1127 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 DMP1Q13316 513 aaPredicted RBP14.7□□□□□ -0.06
HMGB1-202ENST00000339872 TSR1Q2NL82 804 aaKnown RBP14.7□□□□□ -0.06
HMGB1-202ENST00000339872 DCAF17Q5H9S7 520 aaPredicted RBP14.7□□□□□ -0.06
HMGB1-202ENST00000339872 RAD9BQ6WBX8 426 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 NYAP1Q6ZVC0 841 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 MCPH1Q8NEM0 835 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 GOLGA5Q8TBA6 731 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 MORC4Q8TE76 937 aa14.7□□□□□ -0.06
HMGB1-202ENST00000339872 ACCSQ96QU6 501 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms