RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ZNF236Q9UL36 1845 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 ZMYM2Q9UBW7 1377 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 FAM155AB1AL88 458 aaPredicted RBP17.05■□□□□ 0.32
LIMS1-202ENST00000338045 KIF3CO14782 793 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 NKRFO15226 690 aaKnown RBP eCLIP17.05■□□□□ 0.32
LIMS1-202ENST00000338045 TGFB1I1O43294 461 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 CALUO43852 315 aaPredicted RBP17.05■□□□□ 0.32
LIMS1-202ENST00000338045 TPM2P07951 284 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 CLCN1P35523 988 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 UBXN1Q04323 297 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 KCNA1Q09470 495 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 ALCAMQ13740 583 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 ZC2HC1CQ53FD0 456 aaPredicted RBP17.05■□□□□ 0.32
LIMS1-202ENST00000338045 MAEAQ7L5Y9 396 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 SCFD2Q8WU76 684 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 NOC4LQ9BVI4 516 aaKnown RBP17.05■□□□□ 0.32
LIMS1-202ENST00000338045 TMX1Q9H3N1 280 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 MLXIPQ9HAP2 919 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 GPBP1L1Q9HC44 474 aaPredicted RBP17.05■□□□□ 0.32
LIMS1-202ENST00000338045 VTA1Q9NP79 307 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 CYP26B1Q9NR63 512 aa17.05■□□□□ 0.32
LIMS1-202ENST00000338045 MYH9P35579 1960 aaKnown RBP17.04■□□□□ 0.32
LIMS1-202ENST00000338045 DGAT1O75907 488 aa17.04■□□□□ 0.32
LIMS1-202ENST00000338045 OATP04181 439 aa17.04■□□□□ 0.32
LIMS1-202ENST00000338045 SKILP12757 684 aa17.04■□□□□ 0.32
LIMS1-202ENST00000338045 ADAM9Q13443 819 aa17.04■□□□□ 0.32
LIMS1-202ENST00000338045 MAN2A1Q16706 1144 aa17.04■□□□□ 0.32
LIMS1-202ENST00000338045 TRMT1LQ7Z2T5 733 aaKnown RBP17.04■□□□□ 0.32
LIMS1-202ENST00000338045 IFNL1Q8IU54 200 aa17.04■□□□□ 0.32
LIMS1-202ENST00000338045 TC2NQ8N9U0 490 aa17.04■□□□□ 0.32
LIMS1-202ENST00000338045 NIFKQ9BYG3 293 aaKnown RBP17.04■□□□□ 0.32
LIMS1-202ENST00000338045 SEPT9Q9UHD8 586 aaPredicted RBP17.04■□□□□ 0.32
LIMS1-202ENST00000338045 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.04■□□□□ 0.32
LIMS1-202ENST00000338045 RBM47A0AV96 593 aaKnown RBP17.03■□□□□ 0.32
LIMS1-202ENST00000338045 SLC15A5A6NIM6 579 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 CETN3O15182 167 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 NR2F2P24468 414 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 TTLL4Q14679 1199 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 TAF1CQ15572 869 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-202ENST00000338045 VWA3BQ502W6 1294 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 TAPT1Q6NXT6 567 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 SLC17A8Q8NDX2 589 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 MCPH1Q8NEM0 835 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 KIFAP3Q92845 792 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 CCDC102AQ96A19 550 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 HHIPL1Q96JK4 782 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 GPR20Q99678 358 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 KATNBL1Q9H079 304 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 C17orf75Q9HAS0 396 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 GPRC5CQ9NQ84 441 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 PDGFCQ9NRA1 345 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 CPA4Q9UI42 421 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 LGR5O75473 907 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 TXNP10599 105 aaKnown RBP17.03■□□□□ 0.32
LIMS1-202ENST00000338045 TCF7P36402 384 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-202ENST00000338045 STAT5BP51692 787 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 NCKAP1LP55160 1127 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 RTP1P59025 263 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 TRIM14Q14142 442 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 HSDL1Q3SXM5 330 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 FAM160B1Q5W0V3 765 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 CEP135Q66GS9 1140 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 C17orf99Q6UX52 265 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 SMC1BQ8NDV3 1235 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 CCDC112Q8NEF3 446 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 MAML3Q96JK9 1138 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 ERGIC2Q96RQ1 377 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 CEP89Q96ST8 783 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 NTPCRQ9BSD7 190 aaKnown RBP17.03■□□□□ 0.32
LIMS1-202ENST00000338045 XPNPEP1Q9NQW7 623 aa17.03■□□□□ 0.32
LIMS1-202ENST00000338045 K7ENM7 598 aa17.02■□□□□ 0.32
LIMS1-202ENST00000338045 TLR2O60603 784 aa17.02■□□□□ 0.32
LIMS1-202ENST00000338045 GYPCP04921 128 aa17.02■□□□□ 0.32
LIMS1-202ENST00000338045 RPL13P26373 211 aaKnown RBP17.02■□□□□ 0.32
LIMS1-202ENST00000338045 GTF2BQ00403 316 aa17.02■□□□□ 0.32
LIMS1-202ENST00000338045 RBL2Q08999 1139 aa17.02■□□□□ 0.32
LIMS1-202ENST00000338045 TBC1D8BQ0IIM8 1120 aa17.02■□□□□ 0.32
LIMS1-202ENST00000338045 FAM102BQ5T8I3 360 aa17.02■□□□□ 0.32
LIMS1-202ENST00000338045 DPP9Q86TI2 863 aa17.02■□□□□ 0.32
LIMS1-202ENST00000338045 TRIM59Q8IWR1 403 aa17.02■□□□□ 0.32
LIMS1-202ENST00000338045 DHX37Q8IY37 1157 aaKnown RBP17.02■□□□□ 0.32
LIMS1-202ENST00000338045 NDST4Q9H3R1 872 aa17.02■□□□□ 0.32
LIMS1-202ENST00000338045 SPTLC3Q9NUV7 552 aa17.02■□□□□ 0.32
LIMS1-202ENST00000338045 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.02■□□□□ 0.32
LIMS1-202ENST00000338045 AKR1B15C9JRZ8 316 aaPredicted RBP17.01■□□□□ 0.31
LIMS1-202ENST00000338045 SNAI1O95863 264 aaPredicted RBP17.01■□□□□ 0.31
LIMS1-202ENST00000338045 NR3C1P04150 777 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 KCNJ6P48051 423 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 TARBP2Q15633 366 aaKnown RBP17.01■□□□□ 0.31
LIMS1-202ENST00000338045 MORN1Q5T089 497 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 PPFIBP1Q86W92 1011 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 TMEM174Q8WUU8 243 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 SPIRE2Q8WWL2 714 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 GBP3Q9H0R5 595 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 DHX33Q9H6R0 707 aaKnown RBP17.01■□□□□ 0.31
LIMS1-202ENST00000338045 ATP6V0A4Q9HBG4 840 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 PES1O00541 588 aaKnown RBP17.01■□□□□ 0.31
LIMS1-202ENST00000338045 ADKP55263 362 aaKnown RBP17.01■□□□□ 0.31
LIMS1-202ENST00000338045 PEX3P56589 373 aa17.01■□□□□ 0.31
LIMS1-202ENST00000338045 GOLGA8FQ08AF8 430 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms