RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ATXN7L3BQ96GX2 97 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 CALR3Q96L12 384 aaKnown RBP13.5□□□□□ -0.25
SDC3-201ENST00000336798 H0Y3Z8 333 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 SH2B2O14492 632 aaPredicted RBP13.5□□□□□ -0.25
SDC3-201ENST00000336798 SRGAP2O75044 1071 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 OSBP2Q969R2 916 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 FMO2Q99518 471 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 EGFL8Q99944 293 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 PIH1D3Q9NQM4 214 aaKnown RBP13.5□□□□□ -0.25
SDC3-201ENST00000336798 PPARGC1AQ9UBK2 798 aaKnown RBP13.5□□□□□ -0.25
SDC3-201ENST00000336798 SUN2Q9UH99 717 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 ADAMTS1Q9UHI8 967 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 RWDD2AQ9UIY3 292 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 ZHX2Q9Y6X8 837 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 USP17L5A8MUK1 530 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 MTMR1Q13613 665 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 ZNF568Q3ZCX4 644 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 TAS2R42Q7RTR8 314 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 CCNYL1Q8N7R7 359 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 TEKT4Q8WW24 435 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 CCDC90BQ9GZT6 254 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 UBA6A0AVT1 1052 aaPredicted RBP13.5□□□□□ -0.25
SDC3-201ENST00000336798 SLC16A4O15374 487 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 PBKQ96KB5 322 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 CASS4Q9NQ75 786 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 NDFIP2Q9NV92 336 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 POLR3EQ9NVU0 708 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 KIAA0232Q92628 1395 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 MYO1CO00159 1063 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 GCLMP48507 274 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 GYS2P54840 703 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 APBA1Q02410 837 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 TMEM270Q6UE05 265 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 RFX8Q6ZV50 586 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 FAM47EQ6ZV65 393 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 NUDCD3Q8IVD9 361 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 TRIML2Q8N7C3 387 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 MAP4K1Q92918 833 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 ELAC2Q9BQ52 826 aaKnown RBP13.5□□□□□ -0.25
SDC3-201ENST00000336798 KIF17Q9P2E2 1029 aa13.5□□□□□ -0.25
SDC3-201ENST00000336798 MAPKBP1O60336 1514 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 PNMA6FA0A0J9YX94 578 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 GCFC2P16383 781 aaKnown RBP13.49□□□□□ -0.25
SDC3-201ENST00000336798 ZNF699Q32M78 642 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 NUGGCQ68CJ6 796 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 CRLF3Q8IUI8 442 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 ULK4Q96C45 1275 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 YIPF3Q9GZM5 350 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 RGS12O14924 1447 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 RASSF3Q86WH2 238 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 PDIK1LQ8N165 341 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 PBXIP1Q96AQ6 731 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 SIK2Q9H0K1 926 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 POTEMA6NI47 508 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 PER1O15534 1290 aaPredicted RBP13.49□□□□□ -0.25
SDC3-201ENST00000336798 CLDN3O15551 220 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 PCP11498 1178 aaKnown RBP13.49□□□□□ -0.25
SDC3-201ENST00000336798 THEMIS2Q5TEJ8 643 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 TBC1D1Q86TI0 1168 aaPredicted RBP13.49□□□□□ -0.25
SDC3-201ENST00000336798 SPON2Q9BUD6 331 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 UPF3AQ9H1J1 476 aaKnown RBP13.49□□□□□ -0.25
SDC3-201ENST00000336798 GJB4Q9NTQ9 266 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 PCDHA6Q9UN73 950 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 PCDHA8Q9Y5H6 950 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 ATP10DQ9P241 1426 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 ARHGEF37A1IGU5 675 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 M0QYV0 167 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 COPEO14579 308 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 FLOT2Q14254 428 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 MMS22LQ6ZRQ5 1243 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 C2orf69Q8N8R5 385 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 RABGGTAQ92696 567 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 RNF25Q96BH1 459 aaPredicted RBP13.49□□□□□ -0.25
SDC3-201ENST00000336798 ZFYVE19Q96K21 471 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 DACH2Q96NX9 599 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 KLC2Q9H0B6 622 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 NDST4Q9H3R1 872 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 WARS2Q9UGM6 360 aaKnown RBP13.49□□□□□ -0.25
SDC3-201ENST00000336798 DNAJC12Q9UKB3 198 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 SNX24Q9Y343 169 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 TRIM49BA6NDI0 452 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 PAPOLAP51003 745 aaKnown RBP13.49□□□□□ -0.25
SDC3-201ENST00000336798 RWDD2BP57060 319 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 ELMSAN1Q6PJG2 1045 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 GSPT2Q8IYD1 628 aaKnown RBP13.49□□□□□ -0.25
SDC3-201ENST00000336798 RFWD2Q8NHY2 731 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 NEK9Q8TD19 979 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 SAAL1Q96ER3 474 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 SERPINI1Q99574 410 aa13.49□□□□□ -0.25
SDC3-201ENST00000336798 TDRD3Q9H7E2 651 aaKnown RBP13.49□□□□□ -0.25
SDC3-201ENST00000336798 A0A087WUV0 522 aaPredicted RBP13.48□□□□□ -0.25
SDC3-201ENST00000336798 SYCE1LA8MT33 242 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 SERPIND1P05546 499 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 PYGLP06737 847 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 TSPY1Q01534 308 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 DYDC2Q96IM9 177 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 VPS39Q96JC1 886 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 EIF2AQ9BY44 585 aaKnown RBP13.48□□□□□ -0.25
SDC3-201ENST00000336798 TXLNGQ9NUQ3 528 aa13.48□□□□□ -0.25
SDC3-201ENST00000336798 ADAM22Q9P0K1 906 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms