RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 GRIK4Q16099 956 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 SASS6Q6UVJ0 657 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 C7orf31Q8N865 590 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 KLHDC9Q8NEP7 349 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 C7orf25Q9BPX7 421 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 FGFBP2Q9BYJ0 223 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 SLC39A2Q9NP94 309 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 MAN1B1Q9UKM7 699 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 GDAQ9Y2T3 454 aa17.09■□□□□ 0.33
PDLIM5-202ENST00000318007 SLC26A4O43511 780 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 ZEB2O60315 1214 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 HBP1O60381 514 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 SMC2O95347 1197 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 SLC26A2P50443 739 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 ACLYP53396 1101 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 NBPF20Q3BBV1 942 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 HERC4Q5GLZ8 1057 aaPredicted RBP17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 LMBR1Q8WVP7 490 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 MTG1Q9BT17 334 aaPredicted RBP17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 KIFC3Q9BVG8 833 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 ATP6V0A4Q9HBG4 840 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 XPNPEP1Q9NQW7 623 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 EXOC1Q9NV70 894 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 HDAC6Q9UBN7 1215 aa17.08■□□□□ 0.33
PDLIM5-202ENST00000318007 KLRC4O43908 158 aa17.08■□□□□ 0.32
PDLIM5-202ENST00000318007 FAM13AO94988 1023 aa17.08■□□□□ 0.32
PDLIM5-202ENST00000318007 TMEM62Q0P6H9 643 aa17.08■□□□□ 0.32
PDLIM5-202ENST00000318007 COASYQ13057 564 aa17.08■□□□□ 0.32
PDLIM5-202ENST00000318007 DPCR1Q3MIW9 517 aa17.08■□□□□ 0.32
PDLIM5-202ENST00000318007 CCSAPQ6IQ19 270 aaPredicted RBP17.08■□□□□ 0.32
PDLIM5-202ENST00000318007 SFR1Q86XK3 245 aa17.08■□□□□ 0.32
PDLIM5-202ENST00000318007 KSR1Q8IVT5 923 aa17.08■□□□□ 0.32
PDLIM5-202ENST00000318007 MYCT1Q8N699 235 aa17.08■□□□□ 0.32
PDLIM5-202ENST00000318007 U2AF1L4Q8WU68 220 aaKnown RBP17.08■□□□□ 0.32
PDLIM5-202ENST00000318007 NIFKQ9BYG3 293 aaKnown RBP17.08■□□□□ 0.32
PDLIM5-202ENST00000318007 DGAT1O75907 488 aa17.07■□□□□ 0.32
PDLIM5-202ENST00000318007 TFRCP02786 760 aaKnown RBP17.07■□□□□ 0.32
PDLIM5-202ENST00000318007 BMP6P22004 513 aa17.07■□□□□ 0.32
PDLIM5-202ENST00000318007 KLRC1P26715 233 aa17.07■□□□□ 0.32
PDLIM5-202ENST00000318007 TARBP2Q15633 366 aaKnown RBP17.07■□□□□ 0.32
PDLIM5-202ENST00000318007 PKN2Q16513 984 aaKnown RBP17.07■□□□□ 0.32
PDLIM5-202ENST00000318007 DAW1Q8N136 415 aa17.07■□□□□ 0.32
PDLIM5-202ENST00000318007 PCSK9Q8NBP7 692 aaKnown RBP17.07■□□□□ 0.32
PDLIM5-202ENST00000318007 FAM49AQ9H0Q0 323 aaPredicted RBP17.07■□□□□ 0.32
PDLIM5-202ENST00000318007 POLR3FQ9H1D9 316 aaPredicted RBP17.07■□□□□ 0.32
PDLIM5-202ENST00000318007 A0A1W2PQ45 241 aaPredicted RBP17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 A0A1W2PQY0 241 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 KBTBD13C9JR72 458 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 XRCC6P12956 609 aaKnown RBP eCLIP17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 TYRO3Q06418 890 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 KLHL10Q6JEL2 608 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 EFCAB12Q6NXP0 572 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 CEP89Q96ST8 783 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 KATNAL1Q9BW62 490 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 LRRC27Q9C0I9 530 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 TUBE1Q9UJT0 475 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 GINS2Q9Y248 185 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 TREHO43280 583 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 ATN1P54259 1190 aaPredicted RBP17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 PEX3P56589 373 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 STK4Q13043 487 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 MAPK7Q13164 816 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 ODR4Q5SWX8 454 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 MARCH8Q5T0T0 291 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 RBM43Q6ZSC3 357 aaKnown RBP17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 UNC13DQ70J99 1090 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 BSNDQ8WZ55 320 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 GLT1D1Q96MS3 346 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 DNAJC25Q9H1X3 360 aa17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 DHX33Q9H6R0 707 aaKnown RBP17.06■□□□□ 0.32
PDLIM5-202ENST00000318007 LOXHD1Q8IVV2 1947 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 CCDC169A6NNP5 214 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 C22orf31O95567 290 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 VTNP04004 478 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 CST5P28325 142 aaPredicted RBP17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 NMT1P30419 496 aaKnown RBP17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 SARSP49591 514 aaKnown RBP17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 CASP5P51878 434 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 L1TD1Q5T7N2 865 aaKnown RBP17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 NFRKBQ6P4R8 1299 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 RHPN2Q8IUC4 686 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 CCDC65Q8IXS2 484 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 ARRDC4Q8NCT1 418 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 DIS3LQ8TF46 1054 aaKnown RBP17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 MRPL44Q9H9J2 332 aaKnown RBP17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 PARVGQ9HBI0 331 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 STARD7Q9NQZ5 370 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 AKT3Q9Y243 479 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 GRIN2DO15399 1336 aa17.05■□□□□ 0.32
PDLIM5-202ENST00000318007 C17orf102A2RUQ5 167 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 HAS3O00219 553 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 MAFO75444 373 aaPredicted RBP17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 GUCY2CP25092 1073 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 MKRN4PQ13434 485 aaPredicted RBP17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 ITGA7Q13683 1181 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 ANO6Q4KMQ2 910 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 GDF6Q6KF10 455 aaPredicted RBP17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 MTHFD1LQ6UB35 978 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 RUFY4Q6ZNE9 571 aa17.04■□□□□ 0.32
PDLIM5-202ENST00000318007 C11orf57Q6ZUT1 292 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms