RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 LINC00301Q8NCQ3 95 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 AMNQ9BXJ7 453 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 RCOR1Q9UKL0 485 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 MMP1P03956 469 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 LMCD1Q9NZU5 365 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 SUGT1Q9Y2Z0 365 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 SRPRBQ9Y5M8 271 aaKnown RBP14.8□□□□□ -0.04
CSPG4-201ENST00000308508 CCDC78A2IDD5 438 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 CLIC2O15247 247 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 PJA2O43164 708 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 TRAF7Q6Q0C0 670 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 TAF1DQ9H5J8 278 aaPredicted RBP14.8□□□□□ -0.04
CSPG4-201ENST00000308508 BLOC1S6Q9UL45 172 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 CFAP43Q8NDM7 1665 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 GUCY1A3Q02108 690 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 CYP27A1Q02318 531 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 KRT31Q15323 416 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 ARMCX2Q7L311 632 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 FSD1LQ9BXM9 530 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 FTOQ9C0B1 505 aaKnown RBP eCLIP14.8□□□□□ -0.04
CSPG4-201ENST00000308508 ABHD10Q9NUJ1 306 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 LARGE2Q8N3Y3 721 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 RMDN2Q96LZ7 410 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 EML4Q9HC35 981 aaKnown RBP14.8□□□□□ -0.04
CSPG4-201ENST00000308508 ATP10DQ9P241 1426 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 GSNP06396 782 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 LRRC8EQ6NSJ5 796 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 MAGEB5Q9BZ81 275 aa14.8□□□□□ -0.04
CSPG4-201ENST00000308508 H0YIN7 160 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 VCAM1P19320 739 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 ICA1Q05084 483 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 INPP5AQ14642 412 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 ADNPQ9H2P0 1102 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 EMILIN3Q9NT22 766 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 FNDC3AQ9Y2H6 1198 aaKnown RBP14.79□□□□□ -0.04
CSPG4-201ENST00000308508 PTK2BQ14289 1009 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 TOGARAM2Q6ZUX3 1019 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 AKT3Q9Y243 479 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 CCDC195A0A1B0GUA6 201 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 TARSL2A2RTX5 802 aaKnown RBP14.79□□□□□ -0.04
CSPG4-201ENST00000308508 ALDH1B1P30837 517 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 LRRC41Q15345 812 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 CSADQ9Y600 493 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 ZSCAN9O15535 394 aaPredicted RBP14.79□□□□□ -0.04
CSPG4-201ENST00000308508 GOLGA8HP0CJ92 632 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 CIITAP33076 1130 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 NSUN2Q08J23 767 aaKnown RBP eCLIP14.79□□□□□ -0.04
CSPG4-201ENST00000308508 CDR2LQ86X02 465 aaPredicted RBP14.79□□□□□ -0.04
CSPG4-201ENST00000308508 PI4K2BG5E9Z4 385 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 RNF139Q8WU17 664 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 PHF21AQ96BD5 680 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 CYP4F11Q9HBI6 524 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 CDCA7Q9BWT1 371 aaPredicted RBP14.79□□□□□ -0.04
CSPG4-201ENST00000308508 ZWILCHQ9H900 591 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 GCP02774 474 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 BRAFP15056 766 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 PGM1P36871 562 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 CNPY4Q8N129 248 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 MAP4K1Q92918 833 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 ABCF3Q9NUQ8 709 aa14.79□□□□□ -0.04
CSPG4-201ENST00000308508 ARHGEF10O15013 1369 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 OR6B2Q6IFH4 312 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 CEP72Q9P209 647 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 INPP5FQ9Y2H2 1132 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 TOM1O60784 492 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 SERPINB1P30740 379 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 GNL1P36915 607 aaPredicted RBP14.78□□□□□ -0.04
CSPG4-201ENST00000308508 DMC1Q14565 340 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 KDM4CQ9H3R0 1056 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 CXorf56Q9H5V9 222 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 ITM2BQ9Y287 266 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 WDR17Q8IZU2 1322 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 PTPN21Q16825 1174 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 BTNL9Q6UXG8 535 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 ERICH1Q86X53 443 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 NSUN7Q8NE18 718 aaKnown RBP14.78□□□□□ -0.04
CSPG4-201ENST00000308508 EDC3Q96F86 508 aaKnown RBP14.78□□□□□ -0.04
CSPG4-201ENST00000308508 SNX24Q9Y343 169 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 MAP3K19Q56UN5 1328 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 CFAP69A5D8W1 941 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 SORBS3O60504 671 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 ZNF18P17022 549 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 CDH2P19022 906 aaPredicted RBP14.78□□□□□ -0.04
CSPG4-201ENST00000308508 HSPA9P38646 679 aaKnown RBP14.78□□□□□ -0.04
CSPG4-201ENST00000308508 CYTH1Q15438 398 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 DAB2IPQ5VWQ8 1189 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 GRAMD1CQ8IYS0 662 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.78□□□□□ -0.04
CSPG4-201ENST00000308508 OSBPL9Q96SU4 736 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 EPN3Q9H201 632 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 PAGE5Q96GU1 130 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 KIF2CQ99661 725 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 SENP1Q9P0U3 644 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 ANAPC7Q9UJX3 599 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 TBC1D4O60343 1298 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 CEP78Q5JTW2 689 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 BPIFA3Q9BQP9 254 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 GID8Q9NWU2 228 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 ADAMTS1Q9UHI8 967 aa14.78□□□□□ -0.04
CSPG4-201ENST00000308508 RNF123Q5XPI4 1314 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms