RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 NPHP4O75161 1426 aaPredicted RBP18.57■□□□□ 0.56
SYNPO-201ENST00000307662 ZSCAN20P17040 1043 aaPredicted RBP18.57■□□□□ 0.56
SYNPO-201ENST00000307662 STAMBPL1Q96FJ0 436 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 CAPN11Q9UMQ6 739 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 USPL1Q5W0Q7 1092 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 USP17L2Q6R6M4 530 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 KIF2CQ99661 725 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 LRRC1Q9BTT6 524 aa18.57■□□□□ 0.56
SYNPO-201ENST00000307662 CNOT8Q9UFF9 292 aaKnown RBP18.57■□□□□ 0.56
SYNPO-201ENST00000307662 PVALEFA0A1B0GWK0 134 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 ELF1P32519 619 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 STAT2P52630 851 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 SLC12A1Q13621 1099 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 UBE2SQ16763 222 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 HP1BP3Q5SSJ5 553 aaPredicted RBP18.56■□□□□ 0.56
SYNPO-201ENST00000307662 FAM149B1Q96BN6 582 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 MAGED2Q9UNF1 606 aaPredicted RBP18.56■□□□□ 0.56
SYNPO-201ENST00000307662 LEMD3Q9Y2U8 911 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 OCRLQ01968 901 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 NLRP10Q86W26 655 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 SLC7A3Q8WY07 619 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 ZCCHC11Q5TAX3 1644 aaKnown RBP18.56■□□□□ 0.56
SYNPO-201ENST00000307662 TRPM1Q7Z4N2 1603 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 ZRANB2O95218 330 aaKnown RBP eCLIP18.56■□□□□ 0.56
SYNPO-201ENST00000307662 SESTD1Q86VW0 696 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 CCT8L2Q96SF2 557 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 TTC1Q99614 292 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 OR6B2Q6IFH4 312 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 ICA1LQ8NDH6 482 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 GIPC2Q8TF65 315 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 POLR3CQ9BUI4 534 aaPredicted RBP18.56■□□□□ 0.56
SYNPO-201ENST00000307662 KLC2Q9H0B6 622 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 MAP3K4Q9Y6R4 1608 aa18.56■□□□□ 0.56
SYNPO-201ENST00000307662 TEDDM1Q5T9Z0 273 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 FBXL13Q8NEE6 735 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.55■□□□□ 0.562e-6■■■■■ 51.6
SYNPO-201ENST00000307662 DPF2Q92785 391 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 TRPV6Q9H1D0 765 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 MRPL40Q9NQ50 206 aaKnown RBP18.55■□□□□ 0.56
SYNPO-201ENST00000307662 PPME1Q9Y570 386 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 ERVV-1B6SEH8 477 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 PPIP5K2O43314 1243 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 HSPA9P38646 679 aaKnown RBP18.55■□□□□ 0.56
SYNPO-201ENST00000307662 TMTC4Q5T4D3 741 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 TRIM67Q6ZTA4 783 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.55■□□□□ 0.56
SYNPO-201ENST00000307662 SNX12Q9UMY4 172 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 KCNH2Q12809 1159 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 SHC4Q6S5L8 630 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 ZWILCHQ9H900 591 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 ZNF211Q13398 564 aaPredicted RBP18.55■□□□□ 0.56
SYNPO-201ENST00000307662 SPATA21Q7Z572 469 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 CEP170P1Q96L14 293 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 STRBPQ96SI9 672 aaKnown RBP18.55■□□□□ 0.56
SYNPO-201ENST00000307662 HEMGNQ9BXL5 484 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 XDHP47989 1333 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 EPHB1P54762 984 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 MYLK4Q86YV6 388 aaPredicted RBP18.55■□□□□ 0.56
SYNPO-201ENST00000307662 TBC1D10CQ8IV04 446 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 NIM1KQ8IY84 436 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 TTC13Q8NBP0 860 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 SPC25Q9HBM1 224 aa18.55■□□□□ 0.56
SYNPO-201ENST00000307662 CYP2D7A0A087X1C5 515 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 NVLO15381 856 aaKnown RBP18.54■□□□□ 0.56
SYNPO-201ENST00000307662 NT5C2P49902 561 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 DHX34Q14147 1143 aaKnown RBP18.54■□□□□ 0.56
SYNPO-201ENST00000307662 LRIG3Q6UXM1 1119 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 ACAD11Q709F0 780 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 HPCAL4Q9UM19 191 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 RFX7Q2KHR2 1363 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 KITP10721 976 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 TFAMQ00059 246 aaKnown RBP18.54■□□□□ 0.56
SYNPO-201ENST00000307662 TMEM259Q4ZIN3 620 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 KLC3Q6P597 504 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 BHMT2Q9H2M3 363 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 WARS2Q9UGM6 360 aaKnown RBP18.54■□□□□ 0.56
SYNPO-201ENST00000307662 ARL2BPQ9Y2Y0 163 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 STXBP3O00186 592 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 PSMA2P25787 234 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 OXER1Q8TDS5 423 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 ZC3H15Q8WU90 426 aaKnown RBP18.54■□□□□ 0.56
SYNPO-201ENST00000307662 SKA2Q8WVK7 121 aaPredicted RBP18.54■□□□□ 0.56
SYNPO-201ENST00000307662 RAD54LQ92698 747 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 DTNBP1Q96EV8 351 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 SCHIP1Q9P0W5 487 aaPredicted RBP18.54■□□□□ 0.56
SYNPO-201ENST00000307662 H7C1W4 665 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 CD58P19256 250 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 NOP14P78316 857 aaKnown RBP18.54■□□□□ 0.56
SYNPO-201ENST00000307662 SEMA3FQ13275 785 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 TAF1BQ53T94 588 aaPredicted RBP18.54■□□□□ 0.56
SYNPO-201ENST00000307662 ERICH1Q86X53 443 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 BBS5Q8N3I7 341 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 IL17RAQ96F46 866 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 SNF8Q96H20 258 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 SEC31BQ9NQW1 1179 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 TRIM33Q9UPN9 1127 aa18.54■□□□□ 0.56
SYNPO-201ENST00000307662 PNMA6FA0A0J9YX94 578 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 WDR64B1ANS9 1081 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 NR3C1P04150 777 aa18.53■□□□□ 0.56
SYNPO-201ENST00000307662 BYSLQ13895 437 aaKnown RBP18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms