RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CCDC60Q8IWA6 550 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 CKAP2LQ8IYA6 745 aa16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 SMAP1Q8IYB5 467 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 TMEM117Q9H0C3 514 aa16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 TBC1D22BQ9NU19 505 aa16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 CEP131Q9UPN4 1083 aa16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 V9GY48 417 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-201ENST00000301897 ZBTB42B2RXF5 422 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 DDX39AO00148 427 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 PER2O15055 1255 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 MAGEB2O15479 319 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 CYP3A4P08684 503 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 RCAN1P53805 252 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 SETQ01105 290 aaPredicted RBP16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 KRT17Q04695 432 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 FUT2Q10981 343 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 KIZQ2M2Z5 673 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 TYW1BQ6NUM6 668 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 SWSAP1Q6NVH7 229 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 PRSS33Q8NF86 280 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 TMEM40Q8WWA1 233 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 MRPS27Q92552 414 aaKnown RBP16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 PGBD1Q96JS3 809 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 FAM167AQ96KS9 214 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 CDHR5Q9HBB8 845 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 ANO2Q9NQ90 1003 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 PCDHGC5Q9Y5F6 944 aa16.77■□□□□ 0.28
CCDC88B-201ENST00000301897 USP34Q70CQ2 3546 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 C22orf31O95567 290 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 ZSCAN20P17040 1043 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 TMOD1P28289 359 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 NUBP1P53384 320 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 ERVFC1P60507 584 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 ANKRD54Q6NXT1 300 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 FAM228AQ86W67 206 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 ABI1Q8IZP0 508 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 METTL13Q8N6R0 699 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 MAP7D2Q96T17 732 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 OSMRQ99650 979 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 ZNF577Q9BSK1 485 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 CWH43Q9H720 699 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 ENTPD7Q9NQZ7 604 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 NR2E1Q9Y466 385 aa16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 MAFBQ9Y5Q3 323 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-201ENST00000301897 CCDC196A0A1B0GTZ2 297 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 CARNS1A5YM72 827 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 FAM86B1E9PN63 330 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 DHX15O43143 795 aaKnown RBP16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 GPR32O75388 356 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 PSAPP07602 524 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 FAM86B2P0C5J1 330 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 TECP42680 631 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 KCNC3Q14003 757 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 COL9A3Q14050 684 aaPredicted RBP16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 DSC3Q14574 896 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 BMS1Q14692 1282 aaKnown RBP16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 PTPN21Q16825 1174 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 TPRNQ4KMQ1 711 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 PLPP4Q5VZY2 271 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 LRRC43Q8N309 656 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 VN1R2Q8NFZ6 395 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 CCDC12Q8WUD4 166 aaPredicted RBP16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 RSPH1Q8WYR4 309 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 ZNF558Q96NG5 402 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 TCF25Q9BQ70 676 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 S1PR5Q9H228 398 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 PCDHA10Q9Y5I2 948 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 KMT2EQ8IZD2 1858 aa16.75■□□□□ 0.27
CCDC88B-201ENST00000301897 PTPRZ1P23471 2315 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 IGLV3-22A0A075B6J6 115 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 ESYT2A0FGR8 921 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 GOLGA8AA7E2F4 631 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 GOLGA8BA8MQT2 603 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 ST18O60284 1047 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 FGFR1P11362 822 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 EXOSC10Q01780 885 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 IER5LQ5T953 404 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 KCNT2Q6UVM3 1135 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 DHX32Q7L7V1 743 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 ZBTB33Q86T24 672 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 CASP10Q92851 521 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 NECTIN4Q96NY8 510 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 SPG21Q9NZD8 308 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 AKT3Q9Y243 479 aa16.74■□□□□ 0.27
CCDC88B-201ENST00000301897 RIF1Q5UIP0 2472 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 VTNP04004 478 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 HMGB1P09429 215 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 ATP4AP20648 1035 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 EIF4BP23588 611 aaKnown RBP16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 ITIH3Q06033 890 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 TCF15Q12870 199 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 KRT32Q14532 448 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 PFKFB3Q16875 520 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 JAKMIP3Q5VZ66 844 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 CES5AQ6NT32 575 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 TMC7Q7Z402 723 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 CRYGNQ8WXF5 182 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 ASIC4Q96FT7 647 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 CASD1Q96PB1 797 aa16.73■□□□□ 0.27
CCDC88B-201ENST00000301897 PPP1R16BQ96T49 567 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms