RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CDK13Q14004 1512 aaKnown RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 CHEK2O96017 543 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 SEC24CP53992 1094 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 YARSP54577 528 aaKnown RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 ZBED6P86452 979 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 IFRD2Q12894 506 aaPredicted RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 CDAN1Q8IWY9 1227 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 AP4S1Q9Y587 144 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 FGD5Q6ZNL6 1462 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 TROQ12816 1431 aaPredicted RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 SOX11P35716 441 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 MKRN3Q13064 507 aaKnown RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 LRRC39Q96DD0 335 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 CAAP1Q9H8G2 361 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 V9GYQ6 96 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 SMNDC1O75940 238 aaKnown RBP eCLIP12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 DHTKD1Q96HY7 919 aaPredicted RBP12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 DKK3Q9UBP4 350 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 IVNS1ABPQ9Y6Y0 642 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 AHCYL1O43865 530 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 SORBS3O60504 671 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 EAPPQ56P03 285 aaPredicted RBP12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 USP33Q8TEY7 942 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 CSRNP1Q96S65 589 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 CALN1Q9BXU9 219 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 ABHD10Q9NUJ1 306 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 KRT37O76014 449 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 S100A9P06702 114 aaKnown RBP12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 PMLP29590 882 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 OR8H2Q8N162 312 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 ZNF483Q8TF39 744 aaPredicted RBP12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 VTI1AQ96AJ9 217 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 FAM135BQ49AJ0 1406 aa12.52□□□□□ -0.4
SHROOM3-201ENST00000296043 F5H423 210 aaPredicted RBP12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 ZNF185O15231 689 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 XPOTO43592 962 aaKnown RBP12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 SASH1O94885 1247 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 SNRPA1P09661 255 aaKnown RBP12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 CPA2P48052 419 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 COPS2P61201 443 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 FAM81BQ96LP2 452 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 TAF1DQ9H5J8 278 aaPredicted RBP12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 USE1Q9NZ43 259 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 FAM153AQ9UHL3 310 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 GOLGA8RI6L899 631 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 LCA5LO95447 670 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 CCDC134Q9H6E4 229 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 STK24Q9Y6E0 443 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 ABCC5O15440 1437 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 DGKIO75912 1065 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 RUNX1T1Q06455 604 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 ASPSCR1Q9BZE9 553 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 DDX47Q9H0S4 455 aaKnown RBP12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 ZNF277Q9NRM2 450 aaPredicted RBP12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 DAPK2Q9UIK4 370 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 KLHL20Q9Y2M5 609 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 PUM3Q15397 648 aaKnown RBP12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 MTBPQ96DY7 904 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 QKIQ96PU8 341 aaKnown RBP eCLIP12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 USP40Q9NVE5 1235 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 NSMCE4AQ9NXX6 385 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 IYDQ6PHW0 289 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 TM6SF1Q9BZW5 370 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 ZSWIM6Q9HCJ5 1215 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 CCDC61Q9Y6R9 512 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 MTERF3Q96E29 417 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 MS4A14Q96JA4 679 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 SPATA2Q9UM82 520 aa12.52□□□□□ -0.41
SHROOM3-201ENST00000296043 PFDN6O15212 129 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 OATP04181 439 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 OR52Z1P0C646 297 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 FAM43BQ6ZT52 329 aaPredicted RBP12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 G2E3Q7L622 706 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 P2RX5Q93086 422 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 XPO6Q96QU8 1125 aaKnown RBP12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 OSBPL5Q9H0X9 879 aaPredicted RBP12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 TMEM245Q9H330 911 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 RPRD2Q5VT52 1461 aaKnown RBP12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 MTTPP55157 894 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 NCAPHQ15003 741 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 MARCH10Q8NA82 808 aaPredicted RBP12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 GLMNQ92990 594 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 TEX12Q9BXU0 123 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 UNC45AQ9H3U1 944 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 PSD3Q9NYI0 1048 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 TAC1P20366 129 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 SMARCA1P28370 1054 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 KRT76Q01546 638 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 NSUN2Q08J23 767 aaKnown RBP eCLIP12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 MAN2A1Q16706 1144 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 ATAD3BQ5T9A4 648 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 FAM81AQ8TBF8 368 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 CALML6Q8TD86 181 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 C17orf50Q8WW18 174 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 FAF2Q96CS3 445 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 GAPVD1Q14C86 1478 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 OCM2P0CE71 109 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 OCMP0CE72 109 aaPredicted RBP12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 ARHGAP17Q68EM7 881 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 ZNF804AQ7Z570 1209 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms