RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PCDHGC5Q9Y5F6 944 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 ZNF536O15090 1300 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 ITIH3Q06033 890 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 ALKBH5Q6P6C2 394 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 FAM71BQ8TC56 605 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 EXOC4Q96A65 974 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 HOOK2Q96ED9 719 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 BCS1LQ9Y276 419 aa20.06■□□□□ 0.8
SHKBP1-201ENST00000291842 ARHGEF35A5YM69 484 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 TBC1D12O60347 775 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 HIP1RO75146 1068 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 C8orf74Q6P047 294 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 SND1Q7KZF4 910 aaKnown RBP eCLIP20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 VIPAS39Q9H9C1 493 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 AGPAT3Q9NRZ7 376 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 KCNH7Q9NS40 1196 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 ZNRF3Q9ULT6 936 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 PSME4Q14997 1843 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 ZC3H4Q9UPT8 1303 aaKnown RBP20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 GGCXP38435 758 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 PTGER2P43116 358 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 JAM2P57087 298 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 SETQ01105 290 aaPredicted RBP20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 CXCL9Q07325 125 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 CBWD6Q4V339 395 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 CBWD3Q5JTY5 395 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 CBWD5Q5RIA9 395 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 NIM1KQ8IY84 436 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 AENQ8WTP8 325 aaKnown RBP20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 TSKSQ9UJT2 592 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 SAMM50Q9Y512 469 aa20.05■□□□□ 0.8
SHKBP1-201ENST00000291842 RBBP6Q7Z6E9 1792 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-201ENST00000291842 RNF40O75150 1001 aa20.04■□□□□ 0.8
SHKBP1-201ENST00000291842 ASNSP08243 561 aa20.04■□□□□ 0.8
SHKBP1-201ENST00000291842 ALAS1P13196 640 aa20.04■□□□□ 0.8
SHKBP1-201ENST00000291842 ZNF131P52739 623 aa20.04■□□□□ 0.8
SHKBP1-201ENST00000291842 HS2ST1Q7LGA3 356 aa20.04■□□□□ 0.8
SHKBP1-201ENST00000291842 STIM2Q9P246 746 aa20.04■□□□□ 0.8
SHKBP1-201ENST00000291842 PGAP2Q9UHJ9 254 aa20.04■□□□□ 0.8
SHKBP1-201ENST00000291842 BZW2Q9Y6E2 419 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-201ENST00000291842 ZSCAN5CA6NGD5 496 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 TISP43B9A030 160 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 TULP1O00294 542 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 PLA2G6O60733 806 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 ICAM1P05362 532 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 HNRNPH2P55795 449 aaKnown RBP20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 B3GNT9Q6UX72 402 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 MIER3Q7Z3K6 550 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 SYCP3Q8IZU3 236 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 DAW1Q8N136 415 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 KCTD17Q8N5Z5 321 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 FAM204AQ9H8W3 233 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 RAVER2Q9HCJ3 691 aaKnown RBP20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 MED4Q9NPJ6 270 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 CCDC66A2RUB6 948 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 PPP1R12BO60237 982 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 EGFRP00533 1210 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 FMO5P49326 533 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 HSD17B4P51659 736 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 PADI6Q6TGC4 694 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 FAM83AQ86UY5 434 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 FRMD4BQ9Y2L6 1034 aa20.03■□□□□ 0.8
SHKBP1-201ENST00000291842 ESYT3A0FGR9 886 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 TMEM150BA6NC51 233 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 AARSP49588 968 aaKnown RBP eCLIP20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 MAPK7Q13164 816 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 RASA3Q14644 834 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 KCTD19Q17RG1 926 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 TBC1D10BQ4KMP7 808 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 U2AF1L4Q8WU68 220 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 CLEC4DQ8WXI8 215 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 PCIF1Q9H4Z3 704 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 TMCO5BA8MYB1 307 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 AGPSO00116 658 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 DDX3XO00571 662 aaKnown RBP eCLIP20.02■□□□□ 0.85e-8■■■■■ 77.1
SHKBP1-201ENST00000291842 KCNK3O14649 394 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 FLOT1O75955 427 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 GLI1P08151 1106 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 PRKCIP41743 596 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 MUM1L1Q5H9M0 696 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 FKBP1CQ5VVH2 108 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 KRT12Q99456 494 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 ODF2LQ9ULJ1 636 aa20.02■□□□□ 0.8
SHKBP1-201ENST00000291842 K7ENM7 598 aa20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 EVI5O60447 810 aa20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 EXOC3O60645 756 aa20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 ITGB3BPQ13352 177 aaPredicted RBP20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 AGBL3Q8NEM8 1001 aa20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 RIT2Q99578 217 aa20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 MYOZ2Q9NPC6 264 aa20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 SEL1LQ9UBV2 794 aa20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 MYH11P35749 1972 aa20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 GTPBP10A4D1E9 387 aaKnown RBP20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 PHF20L1A8MW92 1017 aa20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 EIF2AK2P19525 551 aaKnown RBP20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 PRPF38AQ8NAV1 312 aaKnown RBP20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 INPP4AQ96PE3 977 aaPredicted RBP20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 FBXL5Q9UKA1 691 aa20.01■□□□□ 0.79
SHKBP1-201ENST00000291842 DNAJC12Q9UKB3 198 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms