RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 FAM193AP78312 1265 aa21.95■■□□□ 1.1
VPS53-201ENST00000291074 RASA3Q14644 834 aa21.95■■□□□ 1.1
VPS53-201ENST00000291074 MAP9Q49MG5 647 aa21.95■■□□□ 1.1
VPS53-201ENST00000291074 TEX2Q8IWB9 1127 aa21.95■■□□□ 1.1
VPS53-201ENST00000291074 MSL3Q8N5Y2 521 aaKnown RBP21.95■■□□□ 1.1
VPS53-201ENST00000291074 GOLPH3Q9H4A6 298 aa21.95■■□□□ 1.1
VPS53-201ENST00000291074 KCNH7Q9NS40 1196 aa21.95■■□□□ 1.1
VPS53-201ENST00000291074 ADAM21Q9UKJ8 722 aa21.95■■□□□ 1.1
VPS53-201ENST00000291074 GRID2IPA4D2P6 1211 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 HIP1RO75146 1068 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 DAW1Q8N136 415 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 CLEC4DQ8WXI8 215 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 PCDHGC5Q9Y5F6 944 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 ARHGEF35A5YM69 484 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 PHF20L1A8MW92 1017 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 MAPK7Q13164 816 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 SH2D3AQ9BRG2 576 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 SELENOOQ9BVL4 669 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 MYOZ2Q9NPC6 264 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 AGPAT3Q9NRZ7 376 aa21.94■■□□□ 1.1
VPS53-201ENST00000291074 TRIM49P0CI25 452 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 TRIM49CP0CI26 452 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 ALAS1P13196 640 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 PAFAH1B1P43034 410 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 JAM2P57087 298 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 ITIH3Q06033 890 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 PTPROQ16827 1216 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 RAVER2Q9HCJ3 691 aaKnown RBP21.93■■□□□ 1.1
VPS53-201ENST00000291074 HPCAL4Q9UM19 191 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 LOXHD1Q8IVV2 1947 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 MUM1L1Q5H9M0 696 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 MIER3Q7Z3K6 550 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 NAGPAQ9UK23 515 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 MAP3K10Q02779 954 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 ITGB3BPQ13352 177 aaPredicted RBP21.93■■□□□ 1.1
VPS53-201ENST00000291074 CCDC70Q6NSX1 233 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 RIT2Q99578 217 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 SEL1LQ9UBV2 794 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 ODF2LQ9ULJ1 636 aa21.93■■□□□ 1.1
VPS53-201ENST00000291074 RPTORQ8N122 1335 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 FAM170AA1A519 330 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 GFPT2O94808 682 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 RNASE9P60153 205 aaKnown RBP21.92■■□□□ 1.1
VPS53-201ENST00000291074 CBWD6Q4V339 395 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 CBWD3Q5JTY5 395 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 CBWD5Q5RIA9 395 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 MEI1Q5TIA1 1274 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 HS2ST1Q7LGA3 356 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 TRMT1LQ7Z2T5 733 aaKnown RBP21.92■■□□□ 1.1
VPS53-201ENST00000291074 DEFB132Q7Z7B7 95 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 PLEKHA4Q9H4M7 779 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 ZC3H4Q9UPT8 1303 aaKnown RBP21.92■■□□□ 1.1
VPS53-201ENST00000291074 ALKBH5Q6P6C2 394 aaKnown RBP21.92■■□□□ 1.1
VPS53-201ENST00000291074 POTEAQ6S8J7 498 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 PADI6Q6TGC4 694 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 PRPF38AQ8NAV1 312 aaKnown RBP21.92■■□□□ 1.1
VPS53-201ENST00000291074 RDH13Q8NBN7 331 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 TSKSQ9UJT2 592 aa21.92■■□□□ 1.1
VPS53-201ENST00000291074 TISP43B9A030 160 aa21.91■■□□□ 1.1
VPS53-201ENST00000291074 DHX15O43143 795 aaKnown RBP21.91■■□□□ 1.1
VPS53-201ENST00000291074 MUTP22033 750 aa21.91■■□□□ 1.1
VPS53-201ENST00000291074 PRKCIP41743 596 aa21.91■■□□□ 1.1
VPS53-201ENST00000291074 FMO5P49326 533 aa21.91■■□□□ 1.1
VPS53-201ENST00000291074 MRPS9P82933 396 aaKnown RBP21.91■■□□□ 1.1
VPS53-201ENST00000291074 DEFB129Q9H1M3 183 aa21.91■■□□□ 1.1
VPS53-201ENST00000291074 RGS17Q9UGC6 210 aaPredicted RBP21.91■■□□□ 1.1
VPS53-201ENST00000291074 TMEM150BA6NC51 233 aa21.91■■□□□ 1.1
VPS53-201ENST00000291074 GUCY2CP25092 1073 aa21.91■■□□□ 1.1
VPS53-201ENST00000291074 CFAP221Q4G0U5 840 aa21.91■■□□□ 1.1
VPS53-201ENST00000291074 HSP90B2PQ58FF3 399 aa21.91■■□□□ 1.1
VPS53-201ENST00000291074 RIN2Q8WYP3 895 aaPredicted RBP21.91■■□□□ 1.1
VPS53-201ENST00000291074 SAMM50Q9Y512 469 aa21.91■■□□□ 1.1
VPS53-201ENST00000291074 BZW2Q9Y6E2 419 aaKnown RBP21.91■■□□□ 1.1
VPS53-201ENST00000291074 GTPBP10A4D1E9 387 aaKnown RBP21.9■■□□□ 1.1
VPS53-201ENST00000291074 PPP1R12BO60237 982 aaPredicted RBP21.9■■□□□ 1.1
VPS53-201ENST00000291074 EIF2AK2P19525 551 aaKnown RBP21.9■■□□□ 1.1
VPS53-201ENST00000291074 NFIL3Q16649 462 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 TKFCQ3LXA3 575 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 CIAPIN1Q6FI81 312 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 SYCP3Q8IZU3 236 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 AENQ8WTP8 325 aaKnown RBP21.9■■□□□ 1.1
VPS53-201ENST00000291074 TEPSINQ96N21 525 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 DMAC2Q9NW81 257 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 KCND2Q9NZV8 630 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 FBXL5Q9UKA1 691 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 BCS1LQ9Y276 419 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 ZHX2Q9Y6X8 837 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 ASTN2O75129 1339 aaPredicted RBP21.9■■□□□ 1.1
VPS53-201ENST00000291074 K7ENM7 598 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 SPP2Q13103 211 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 C8orf74Q6P047 294 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 AEBP2Q6ZN18 517 aaPredicted RBP21.9■■□□□ 1.1
VPS53-201ENST00000291074 ACBD3Q9H3P7 528 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 VIPAS39Q9H9C1 493 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 UBE4BO95155 1302 aa21.9■■□□□ 1.1
VPS53-201ENST00000291074 WDR46O15213 610 aaKnown RBP21.89■■□□□ 1.1
VPS53-201ENST00000291074 PPP1R37O75864 691 aa21.89■■□□□ 1.1
VPS53-201ENST00000291074 SYF2O95926 243 aaKnown RBP21.89■■□□□ 1.1
VPS53-201ENST00000291074 NOP2P46087 812 aaKnown RBP21.89■■□□□ 1.1
VPS53-201ENST00000291074 LMAN1P49257 510 aa21.89■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms