RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 SLC25A27O95847 323 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 PSAPP07602 524 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 XRCC5P13010 732 aaKnown RBP16.81■□□□□ 0.28
SF3B4-201ENST00000271628 ERCC3P19447 782 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 ICAM3P32942 547 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 COPB2P35606 906 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 CYLC1P35663 651 aaPredicted RBP16.81■□□□□ 0.28
SF3B4-201ENST00000271628 HERVK_113P62684 666 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 DAW1Q8N136 415 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 GBP3Q9H0R5 595 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 NUCKS1Q9H1E3 243 aaKnown RBP16.81■□□□□ 0.28
SF3B4-201ENST00000271628 ASCC2Q9H1I8 757 aaPredicted RBP16.81■□□□□ 0.28
SF3B4-201ENST00000271628 BCAS3Q9H6U6 928 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 JPH1Q9HDC5 661 aaPredicted RBP16.81■□□□□ 0.28
SF3B4-201ENST00000271628 FAM207AQ9NSI2 230 aaPredicted RBP16.81■□□□□ 0.28
SF3B4-201ENST00000271628 SLC9A2Q9UBY0 812 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 UNCXA6NJT0 531 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 TADA3O75528 432 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 GNG11P61952 73 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 KRT83P78385 493 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 KCNA1Q09470 495 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 KCNMA1Q12791 1236 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 KCNH2Q12809 1159 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 ZC2HC1CQ53FD0 456 aaPredicted RBP16.81■□□□□ 0.28
SF3B4-201ENST00000271628 EAPPQ56P03 285 aaPredicted RBP16.81■□□□□ 0.28
SF3B4-201ENST00000271628 LRRN4CLQ8ND94 238 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 MKNK1Q9BUB5 465 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 STRA6Q9BX79 667 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 TMEM206Q9H813 350 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 ZNF446Q9NWS9 450 aa16.81■□□□□ 0.28
SF3B4-201ENST00000271628 FANCGO15287 622 aa16.8■□□□□ 0.28
SF3B4-201ENST00000271628 PLS3P13797 630 aa16.8■□□□□ 0.28
SF3B4-201ENST00000271628 OSBPP22059 807 aa16.8■□□□□ 0.28
SF3B4-201ENST00000271628 FAM193AP78312 1265 aa16.8■□□□□ 0.28
SF3B4-201ENST00000271628 UGCGQ16739 394 aa16.8■□□□□ 0.28
SF3B4-201ENST00000271628 XKR9Q5GH70 373 aa16.8■□□□□ 0.28
SF3B4-201ENST00000271628 MOB2Q70IA6 237 aa16.8■□□□□ 0.28
SF3B4-201ENST00000271628 CACNA2D4Q7Z3S7 1137 aa16.8■□□□□ 0.28
SF3B4-201ENST00000271628 NCAPG2Q86XI2 1143 aa16.8■□□□□ 0.28
SF3B4-201ENST00000271628 OPTNQ96CV9 577 aa16.8■□□□□ 0.28
SF3B4-201ENST00000271628 PPP1R37O75864 691 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 AKAP3O75969 853 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 IPO7O95373 1038 aaKnown RBP16.79■□□□□ 0.28
SF3B4-201ENST00000271628 AFPP02771 609 aaKnown RBP16.79■□□□□ 0.28
SF3B4-201ENST00000271628 PSMC2P35998 433 aaKnown RBP16.79■□□□□ 0.28
SF3B4-201ENST00000271628 ALDH5A1P51649 535 aaPredicted RBP16.79■□□□□ 0.28
SF3B4-201ENST00000271628 CLCN6P51797 869 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 MYBPC2Q14324 1141 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 MPHOSPH6Q99547 160 aaKnown RBP16.79■□□□□ 0.28
SF3B4-201ENST00000271628 ST6GALNAC4Q9H4F1 302 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 POTEB2H3BUK9 544 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 CLIC2O15247 247 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 KIF5CO60282 957 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 USO1O60763 962 aaKnown RBP16.79■□□□□ 0.28
SF3B4-201ENST00000271628 CNTN2Q02246 1040 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 SYCP3Q8IZU3 236 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 SMCR8Q8TEV9 937 aaPredicted RBP16.79■□□□□ 0.28
SF3B4-201ENST00000271628 CARD6Q9BX69 1037 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 NHEJ1Q9H9Q4 299 aaPredicted RBP16.79■□□□□ 0.28
SF3B4-201ENST00000271628 LZTFL1Q9NQ48 299 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 CEP72Q9P209 647 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 GABBR1Q9UBS5 961 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 ZMYM2Q9UBW7 1377 aa16.79■□□□□ 0.28
SF3B4-201ENST00000271628 EIF3CLB5ME19 914 aaKnown RBP16.78■□□□□ 0.28
SF3B4-201ENST00000271628 K7ENM7 598 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 BACH1O14867 736 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 LDLRAD1Q5T700 205 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 MIS18BP1Q6P0N0 1132 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.78■□□□□ 0.28
SF3B4-201ENST00000271628 MAEAQ7L5Y9 396 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 SLC9A9Q8IVB4 645 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 CCDC155Q8N6L0 562 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 ACRBPQ8NEB7 543 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 TMEM174Q8WUU8 243 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 EIF3CQ99613 913 aaKnown RBP16.78■□□□□ 0.28
SF3B4-201ENST00000271628 PAGR1Q9BTK6 254 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 MYO1AQ9UBC5 1043 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 FRMD4BQ9Y2L6 1034 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 LCTP09848 1927 aa16.78■□□□□ 0.28
SF3B4-201ENST00000271628 ATP8B1O43520 1251 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 ACTR2P61160 394 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 SNRPFP62306 86 aaKnown RBP16.77■□□□□ 0.28
SF3B4-201ENST00000271628 SWSAP1Q6NVH7 229 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 TMCO3Q6UWJ1 677 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 ABHD15Q6UXT9 468 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 ZNF662Q6ZS27 426 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 ANO5Q75V66 913 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 RRAGAQ7L523 313 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 SYN2Q92777 582 aaPredicted RBP16.77■□□□□ 0.28
SF3B4-201ENST00000271628 CCDC42Q96M95 316 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 WDR24Q96S15 920 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 C17orf75Q9HAS0 396 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 AGPAT3Q9NRZ7 376 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 DMAC2Q9NW81 257 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 MRFAP1Q9Y605 127 aa16.77■□□□□ 0.28
SF3B4-201ENST00000271628 EPHB6O15197 1021 aa16.77■□□□□ 0.27
SF3B4-201ENST00000271628 EDNRBP24530 442 aa16.77■□□□□ 0.27
SF3B4-201ENST00000271628 SMTNP53814 917 aa16.77■□□□□ 0.27
SF3B4-201ENST00000271628 FAM186BQ8IYM0 893 aa16.77■□□□□ 0.27
SF3B4-201ENST00000271628 GPR161Q8N6U8 529 aaKnown RBP16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms