RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 ZNF18P17022 549 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 LMNB1P20700 586 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 GMPSP49915 693 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 PABPC4Q13310 644 aaKnown RBP eCLIP12.49□□□□□ -0.411e-6■■■■■ 56.2
CLSTN3-201ENST00000266546 ZKSCAN8Q15776 578 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 QRICH1Q2TAL8 776 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 TRAPPC11Q7Z392 1133 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 SPICE1Q8N0Z3 855 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 ELAC2Q9BQ52 826 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 RIOX1Q9H6W3 641 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 STK17AQ9UEE5 414 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 CCPG1Q9ULG6 757 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 SUFUQ9UMX1 484 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 TFR2Q9UP52 801 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 MYH7P12883 1935 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 LRRD1A4D1F6 860 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 USP17L10C9JJH3 530 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 SLCO1A2P46721 670 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 PPP2R2AP63151 447 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 LRRC63Q05C16 580 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 VPS52Q8N1B4 723 aa12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 TAF1DQ9H5J8 278 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 NOP53Q9NZM5 478 aaKnown RBP12.49□□□□□ -0.41
CLSTN3-201ENST00000266546 BAZ2BQ9UIF8 2168 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 NDUFB10O96000 172 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 BCRP11274 1271 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 ELF1P32519 619 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 PKN1Q16512 942 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 CEP128Q6ZU80 1094 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 GMCL1P1Q8NEA9 526 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 PCDHA6Q9UN73 950 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 PCDHA8Q9Y5H6 950 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 ABCB11O95342 1321 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 DDTLA6NHG4 134 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 MMEP08473 750 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 TBX2Q13207 712 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 DRP2Q13474 957 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 PRR16Q569H4 304 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 CPXCR1Q8N123 301 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 GMCL1Q96IK5 515 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 NR2F2P24468 414 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 CA8P35219 290 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 ALKBH5Q6P6C2 394 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 CCHCR1Q8TD31 782 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 ZIM3Q96PE6 472 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 ANO3Q9BYT9 981 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 VCPKMTQ9H867 229 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 DESP17661 470 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 USP11P51784 963 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 SEC24CP53992 1094 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 GABPAQ06546 454 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 MYO1EQ12965 1108 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 P3H4Q92791 437 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 MKL1Q969V6 931 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 METTL14Q9HCE5 456 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 IVNS1ABPQ9Y6Y0 642 aa12.48□□□□□ -0.41
CLSTN3-201ENST00000266546 PPP1R3GB7ZBB8 358 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 EXOC3O60645 756 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 TFRCP02786 760 aaKnown RBP12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 IREB2P48200 963 aaKnown RBP12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 C10orf76Q5T2E6 689 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 ADSSL1Q8N142 457 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 SMIM24O75264 130 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 VPS41P49754 854 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 SLMAPQ14BN4 828 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 MMGT1Q8N4V1 131 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 PRPF38AQ8NAV1 312 aaKnown RBP12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 PPP2R3BQ9Y5P8 575 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 PP2D1A8MPX8 630 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 WDR46O15213 610 aaKnown RBP12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 SLC26A4O43511 780 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 TAF11Q15544 211 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 CCDC62Q6P9F0 684 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 MYCT1Q8N699 235 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 JMJD4Q9H9V9 463 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 KCNQ5Q9NR82 932 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 FAM198AQ9UFP1 575 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 PACSIN2Q9UNF0 486 aaPredicted RBP12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 IRS2Q9Y4H2 1338 aa12.47□□□□□ -0.41
CLSTN3-201ENST00000266546 THAP12O43422 761 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 CIB2O75838 187 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 ALAS1P13196 640 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 CD44P16070 742 aaKnown RBP12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 UAP1Q16222 522 aaPredicted RBP12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 UBE2SQ16763 222 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 FAM83BQ5T0W9 1011 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 ANKRD20A3Q5VUR7 823 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 CCDC13Q8IYE1 715 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 ARHGAP24Q8N264 748 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 SMARCAL1Q9NZC9 954 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 RNF181Q9P0P0 153 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 ABT1Q9ULW3 272 aaKnown RBP12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 PASKQ96RG2 1323 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 GRID2IPA4D2P6 1211 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 RASGRF2O14827 1237 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 SESN3P58005 492 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 MTMR14Q8NCE2 650 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 BICD1Q96G01 975 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 PLIN4Q96Q06 1357 aa12.46□□□□□ -0.41
CLSTN3-201ENST00000266546 DDX47Q9H0S4 455 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms