RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 MROH8Q9H579 483 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 ZNF302Q9NR11 478 aa18.16■□□□□ 0.5
USP4-201ENST00000265560 IGF2BP3O00425 579 aaKnown RBP eCLIP18.15■□□□□ 0.5
USP4-201ENST00000265560 OFD1O75665 1012 aa18.15■□□□□ 0.5
USP4-201ENST00000265560 MUTP22033 750 aa18.15■□□□□ 0.5
USP4-201ENST00000265560 TCF7P36402 384 aaPredicted RBP18.15■□□□□ 0.5
USP4-201ENST00000265560 MAN2A1Q16706 1144 aa18.15■□□□□ 0.5
USP4-201ENST00000265560 PCYT2Q99447 389 aa18.15■□□□□ 0.5
USP4-201ENST00000265560 ODF2LQ9ULJ1 636 aa18.15■□□□□ 0.5
USP4-201ENST00000265560 STAM2O75886 525 aa18.15■□□□□ 0.5
USP4-201ENST00000265560 CHADLQ6NUI6 762 aa18.15■□□□□ 0.5
USP4-201ENST00000265560 ZNF668Q96K58 619 aaPredicted RBP18.15■□□□□ 0.5
USP4-201ENST00000265560 LARSQ9P2J5 1176 aaKnown RBP18.15■□□□□ 0.5
USP4-201ENST00000265560 FKBP15Q5T1M5 1219 aa18.14■□□□□ 0.5
USP4-201ENST00000265560 RAD9BQ6WBX8 426 aa18.14■□□□□ 0.5
USP4-201ENST00000265560 ZIC5Q96T25 663 aa18.14■□□□□ 0.5
USP4-201ENST00000265560 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.14■□□□□ 0.5
USP4-201ENST00000265560 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.14■□□□□ 0.53e-7■■□□□ 13.3
USP4-201ENST00000265560 NFASCO94856 1347 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 KIF20AO95235 890 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 LYPLA2O95372 231 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 FGFR1OPO95684 399 aaKnown RBP18.14■□□□□ 0.49
USP4-201ENST00000265560 TXNP10599 105 aaKnown RBP18.14■□□□□ 0.49
USP4-201ENST00000265560 ARMCX2Q7L311 632 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 PPP1R13LQ8WUF5 828 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 CYP26B1Q9NR63 512 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 TYW1Q9NV66 732 aaKnown RBP18.14■□□□□ 0.49
USP4-201ENST00000265560 DDX41Q9UJV9 622 aaKnown RBP18.14■□□□□ 0.49
USP4-201ENST00000265560 IVNS1ABPQ9Y6Y0 642 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 ICAM3P32942 547 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 HAUS6Q7Z4H7 955 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 DPP9Q86TI2 863 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 GLG1Q92896 1179 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 SENP7Q9BQF6 1050 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 ABHD10Q9NUJ1 306 aa18.14■□□□□ 0.49
USP4-201ENST00000265560 PDXKO00764 312 aa18.13■□□□□ 0.49
USP4-201ENST00000265560 PLS3P13797 630 aa18.13■□□□□ 0.49
USP4-201ENST00000265560 FKBP1BP68106 108 aa18.13■□□□□ 0.49
USP4-201ENST00000265560 OTUD6AQ7L8S5 288 aa18.13■□□□□ 0.49
USP4-201ENST00000265560 NLRC4Q9NPP4 1024 aa18.13■□□□□ 0.49
USP4-201ENST00000265560 XPNPEP1Q9NQW7 623 aa18.13■□□□□ 0.49
USP4-201ENST00000265560 TRAF3IP3Q9Y228 551 aa18.13■□□□□ 0.49
USP4-201ENST00000265560 LUC7L2Q9Y383 392 aaKnown RBP18.13■□□□□ 0.49
USP4-201ENST00000265560 NRDCO43847 1150 aa18.13■□□□□ 0.49
USP4-201ENST00000265560 TPM1P09493 284 aa18.13■□□□□ 0.49
USP4-201ENST00000265560 PPP1R13BQ96KQ4 1090 aa18.13■□□□□ 0.49
USP4-201ENST00000265560 KCND2Q9NZV8 630 aa18.13■□□□□ 0.49
USP4-201ENST00000265560 NOP56O00567 594 aaKnown RBP18.12■□□□□ 0.49
USP4-201ENST00000265560 CALUO43852 315 aaPredicted RBP18.12■□□□□ 0.49
USP4-201ENST00000265560 TNNT1P13805 278 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 NPTX2P47972 431 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 CHMP4BP1P59074 171 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 PAXIP1Q6ZW49 1069 aaPredicted RBP18.12■□□□□ 0.49
USP4-201ENST00000265560 KCTD17Q8N5Z5 321 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 CBWD1Q9BRT8 395 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 GBP3Q9H0R5 595 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.12■□□□□ 0.492e-15■■■■■ 372.6
USP4-201ENST00000265560 GOLGA8IPA6NC78 632 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 GOLGA8JA6NMD2 632 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 CCNA1P78396 465 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 KCNMA1Q12791 1236 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 DRP2Q13474 957 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 GPR142Q7Z601 462 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 ANKRD23Q86SG2 305 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 TRIM59Q8IWR1 403 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 DHX37Q8IY37 1157 aaKnown RBP18.12■□□□□ 0.49
USP4-201ENST00000265560 TRAPPC12Q8WVT3 735 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 SPATA33Q96N06 139 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 ANKEF1Q9NU02 776 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 ARMCX3Q9UH62 379 aaPredicted RBP18.12■□□□□ 0.49
USP4-201ENST00000265560 TFR2Q9UP52 801 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 ACTN1P12814 892 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 STAT5BP51692 787 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 KCNH2Q12809 1159 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 ENOX2Q16206 610 aaKnown RBP18.12■□□□□ 0.49
USP4-201ENST00000265560 EDRF1Q3B7T1 1238 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 SAPCD2Q86UD0 394 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 AGPAT3Q9NRZ7 376 aa18.12■□□□□ 0.49
USP4-201ENST00000265560 ITIH6Q6UXX5 1313 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 ADGRA3Q8IWK6 1321 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 POLGP54098 1239 aaPredicted RBP18.11■□□□□ 0.49
USP4-201ENST00000265560 NEDD9Q14511 834 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 BMT2Q1RMZ1 405 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 PRAMEF19Q5SWL8 479 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 CNGA4Q8IV77 575 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.11■□□□□ 0.49
USP4-201ENST00000265560 FAM170AA1A519 330 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 ZBTB48P10074 688 aaPredicted RBP18.11■□□□□ 0.49
USP4-201ENST00000265560 ADCYAP1R1P41586 468 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 METTL7BQ6UX53 244 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 RASAL3Q86YV0 1011 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 ACRBPQ8NEB7 543 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 CCDC112Q8NEF3 446 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 RDM1Q8NG50 284 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 FAM84AQ96KN4 292 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 CEP63Q96MT8 703 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 SUGCTQ9HAC7 445 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 SIK3Q9Y2K2 1263 aa18.11■□□□□ 0.49
USP4-201ENST00000265560 A0A1W2PQC6 194 aa18.1■□□□□ 0.49
USP4-201ENST00000265560 ARHGAP6O43182 974 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms