RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TRIM45Q9H8W5 580 aaPredicted RBP20.51■□□□□ 0.87
UPF1-201ENST00000262803 DRP2Q13474 957 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 ACAP3Q96P50 834 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 SMYD2Q9NRG4 433 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 KIAA0391O15091 583 aaKnown RBP20.51■□□□□ 0.87
UPF1-201ENST00000262803 CDC27P30260 824 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 DDIT3P35638 169 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 NR1H3Q13133 447 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 CALN1Q9BXU9 219 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 TXLNGQ9NUQ3 528 aa20.51■□□□□ 0.87
UPF1-201ENST00000262803 SPDYE2BA6NHP3 402 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 GNGT2O14610 69 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 SPDYE6P0CI01 402 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 HOXA13P31271 388 aaPredicted RBP20.5■□□□□ 0.87
UPF1-201ENST00000262803 SOX5P35711 763 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 TMTC4Q5T4D3 741 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 MORC4Q8TE76 937 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 KIF2CQ99661 725 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 PVALEFA0A1B0GWK0 134 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 LRRD1A4D1F6 860 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 MAP3K7O43318 606 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 SLC26A4O43511 780 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 MMP10P09238 476 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 PRDX5P30044 214 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 BASP1P80723 227 aaKnown RBP20.5■□□□□ 0.87
UPF1-201ENST00000262803 DR1Q01658 176 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 GLE1Q53GS7 698 aaKnown RBP20.5■□□□□ 0.87
UPF1-201ENST00000262803 MFSD14CQ5VZR4 134 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 ENAHQ8N8S7 591 aaPredicted RBP20.5■□□□□ 0.87
UPF1-201ENST00000262803 ZBED2Q9BTP6 218 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 NFU1Q9UMS0 254 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 SYNE4Q8N205 404 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 MCUQ8NE86 351 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 A0A087WUV0 522 aaPredicted RBP20.5■□□□□ 0.87
UPF1-201ENST00000262803 MTMR1Q13613 665 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 CTTNQ14247 550 aaKnown RBP20.5■□□□□ 0.87
UPF1-201ENST00000262803 TMED2Q15363 201 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 KIAA1755Q5JYT7 1200 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 FAM182BQ5T319 152 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 FASTKD5Q7L8L6 764 aaKnown RBP20.5■□□□□ 0.87
UPF1-201ENST00000262803 SH3RF3Q8TEJ3 882 aaPredicted RBP20.5■□□□□ 0.87
UPF1-201ENST00000262803 HPCAL4Q9UM19 191 aa20.5■□□□□ 0.87
UPF1-201ENST00000262803 PACSIN2Q9UNF0 486 aaPredicted RBP20.5■□□□□ 0.87
UPF1-201ENST00000262803 IQGAP3Q86VI3 1631 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 HUS1O60921 280 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 ARPP19P56211 112 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 ENOSF1Q7L5Y1 443 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 GTF3C2Q8WUA4 911 aaPredicted RBP20.49■□□□□ 0.87
UPF1-201ENST00000262803 NNMTP40261 264 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 DEPDC1BQ8WUY9 529 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 TMEM47Q9BQJ4 181 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 EDEM3Q9BZQ6 932 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 ALDH8A1Q9H2A2 487 aaPredicted RBP20.49■□□□□ 0.87
UPF1-201ENST00000262803 RASGRF2O14827 1237 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 EIF2AK2P19525 551 aaKnown RBP20.49■□□□□ 0.87
UPF1-201ENST00000262803 PRCPP42785 496 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 MRPS25P82663 173 aaKnown RBP20.49■□□□□ 0.87
UPF1-201ENST00000262803 KRT33BQ14525 404 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 SPOPLQ6IQ16 392 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 TIPINQ9BVW5 301 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 CYP26B1Q9NR63 512 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 STAP1Q9ULZ2 295 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 TMCC1O94876 653 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 ADCY2Q08462 1091 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 TBC1D9BQ66K14 1250 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 RSBN1LQ6PCB5 846 aaPredicted RBP20.49■□□□□ 0.87
UPF1-201ENST00000262803 FBXO41Q8TF61 875 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 GPR101Q96P66 508 aaPredicted RBP20.49■□□□□ 0.87
UPF1-201ENST00000262803 GCOM2Q9BZD3 368 aaPredicted RBP20.49■□□□□ 0.87
UPF1-201ENST00000262803 MRPL40Q9NQ50 206 aaKnown RBP20.49■□□□□ 0.87
UPF1-201ENST00000262803 SPATA31A3Q5VYP0 1347 aa20.49■□□□□ 0.87
UPF1-201ENST00000262803 IQCA1LA6NCM1 817 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 POTEMA6NI47 508 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 MYBL1P10243 752 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 MYLK4Q86YV6 388 aaPredicted RBP20.48■□□□□ 0.87
UPF1-201ENST00000262803 OR6B3Q8NGW1 331 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 GDAP1Q8TB36 358 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 SH3TC2Q8TF17 1288 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 PCDHA6Q9UN73 950 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 PCDHA8Q9Y5H6 950 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 SYNGAP1Q96PV0 1343 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 ASB14A6NK59 587 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 OPHN1O60890 802 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 EIF2AQ9BY44 585 aaKnown RBP20.48■□□□□ 0.87
UPF1-201ENST00000262803 KRT37O76014 449 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 PRR29P0C7W0 189 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 TBK1Q9UHD2 729 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 PPP1R9AQ9ULJ8 1098 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 AXIN2Q9Y2T1 843 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 UBN2Q6ZU65 1347 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 C6orf118Q5T5N4 469 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 CPVLQ9H3G5 476 aa20.48■□□□□ 0.87
UPF1-201ENST00000262803 SRGAP2CP0DJJ0 459 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 PSMA2P25787 234 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 DYNLT1P63172 113 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 PHEXP78562 749 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 ALX1Q15699 326 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 NUDT18Q6ZVK8 323 aa20.47■□□□□ 0.87
UPF1-201ENST00000262803 DDX50Q9BQ39 737 aaKnown RBP20.47■□□□□ 0.87
UPF1-201ENST00000262803 FARP1Q9Y4F1 1045 aaPredicted RBP20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms