RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 HIPK4Q8NE63 616 aa20.07■□□□□ 0.8
SMARCC1-201ENST00000254480 HACD3Q9P035 362 aa20.07■□□□□ 0.8
SMARCC1-201ENST00000254480 EIF3CLB5ME19 914 aaKnown RBP20.07■□□□□ 0.8
SMARCC1-201ENST00000254480 ADGRF4Q8IZF3 695 aa20.07■□□□□ 0.8
SMARCC1-201ENST00000254480 DCAF4Q8WV16 495 aa20.07■□□□□ 0.8
SMARCC1-201ENST00000254480 EIF3CQ99613 913 aaKnown RBP20.07■□□□□ 0.8
SMARCC1-201ENST00000254480 RNF146Q9NTX7 359 aa20.07■□□□□ 0.8
SMARCC1-201ENST00000254480 GABBR1Q9UBS5 961 aa20.07■□□□□ 0.8
SMARCC1-201ENST00000254480 CNOT8Q9UFF9 292 aaKnown RBP20.07■□□□□ 0.8
SMARCC1-201ENST00000254480 PIK3R2O00459 728 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 FOXN1O15353 648 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 TDP2O95551 362 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 STAG2Q8N3U4 1231 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 SPZ1Q9BXG8 430 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 MLXIPLQ9NP71 852 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 DENND3A2RUS2 1198 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 TRPA1O75762 1119 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 C11orf70Q9BRQ4 267 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 ZMYND12Q9H0C1 365 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 NARFQ9UHQ1 456 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 PACSIN2Q9UNF0 486 aaPredicted RBP20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 RNF25Q96BH1 459 aaPredicted RBP20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 CHRNA5P30532 468 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 COASYQ13057 564 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 PDCD7Q8N8D1 485 aaKnown RBP20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 HVCN1Q96D96 273 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 SAYSD1Q9NPB0 183 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 ANKRD65E5RJM6 399 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 MYL1P05976 194 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 CLCN6P51797 869 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 ZNF699Q32M78 642 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 ZBTB41Q5SVQ8 909 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 LMBRD2Q68DH5 695 aaPredicted RBP20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 ANGPTL8Q6UXH0 198 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 TRIM67Q6ZTA4 783 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 SAMD9LQ8IVG5 1584 aa20.06■□□□□ 0.8
SMARCC1-201ENST00000254480 CHGBP05060 677 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 RWDD2BP57060 319 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 ARL6IP4Q66PJ3 421 aaKnown RBP20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 UNC13DQ70J99 1090 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 SNCBQ16143 134 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 STK25O00506 426 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 GSTA4O15217 222 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 CA4P22748 312 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 LCA5Q86VQ0 697 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 RAD54LQ92698 747 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 CLASP1Q7Z460 1538 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 MAP2K2P36507 400 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 MAPK6Q16659 721 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 CXorf38Q8TB03 319 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 RNF181Q9P0P0 153 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 UTYO14607 1347 aa20.05■□□□□ 0.8
SMARCC1-201ENST00000254480 NPHP3-ACAD11A0A0J9YXS1 232 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 YWHAHQ04917 246 aaPredicted RBP20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 CLEC4GQ6UXB4 293 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 TTC17Q96AE7 1141 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 SPATA31A3Q5VYP0 1347 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 MBD5Q9P267 1494 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 HPS3Q969F9 1004 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 ADGRL3Q9HAR2 1447 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 KITP10721 976 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 CLEC10AQ8IUN9 316 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 NEK9Q8TD19 979 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 ARHGEF6Q15052 776 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 C2orf69Q8N8R5 385 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 ANLNQ9NQW6 1124 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 F5H6K3 240 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 CYP19A1P11511 503 aaPredicted RBP20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 KLRC3Q07444 240 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 KCNH2Q12809 1159 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 PANX2Q96RD6 677 aa20.04■□□□□ 0.8
SMARCC1-201ENST00000254480 APBA1Q02410 837 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 KRT33BQ14525 404 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 QRICH1Q2TAL8 776 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 SLFN12LQ6IEE8 588 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 ZNF302Q9NR11 478 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 KIF1BO60333 1816 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 ATP8B3O60423 1300 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 WDR64B1ANS9 1081 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 GUCY1A2P33402 732 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 GCKP35557 465 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 EN1Q05925 392 aaPredicted RBP20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 CACNB2Q08289 660 aaPredicted RBP20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 ARL13BQ3SXY8 428 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 JAK3P52333 1124 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 NCAPGQ9BPX3 1015 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 PNMA3Q9UL41 463 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 ADORA2BP29275 332 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 KLHL8Q9P2G9 620 aaPredicted RBP20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 MROH7-TTC4A0A0A0MT08 1334 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 SH3GLB2Q9NR46 395 aa20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 NOC2LQ9Y3T9 749 aaKnown RBP20.03■□□□□ 0.8
SMARCC1-201ENST00000254480 TRIM49P0CI25 452 aa20.02■□□□□ 0.8
SMARCC1-201ENST00000254480 TRIM49CP0CI26 452 aa20.02■□□□□ 0.8
SMARCC1-201ENST00000254480 NME3Q13232 169 aa20.02■□□□□ 0.8
SMARCC1-201ENST00000254480 CASP8Q14790 479 aa20.02■□□□□ 0.8
SMARCC1-201ENST00000254480 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.02■□□□□ 0.8
SMARCC1-201ENST00000254480 RASIP1Q5U651 963 aa20.02■□□□□ 0.8
SMARCC1-201ENST00000254480 RCSD1Q6JBY9 416 aa20.02■□□□□ 0.8
SMARCC1-201ENST00000254480 SZRD1Q7Z422 152 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms