RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 E7EVH7 732 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 RINT1Q6NUQ1 792 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 RNF10Q8N5U6 811 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 UBLCP1Q8WVY7 318 aaPredicted RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 PLIN4Q96Q06 1357 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 MYO3BQ8WXR4 1341 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 EBAG9O00559 213 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 EPB41P11171 864 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 HNRNPH1P31943 449 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 RBM5P52756 815 aaKnown RBP eCLIP11.66□□□□□ -0.54
USP28-201ENST00000003302 MARSP56192 900 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 SKOR1P84550 965 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 POU5F1Q01860 360 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 PTGISQ16647 500 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 PPP1R18Q6NYC8 613 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 ZC3H3Q8IXZ2 948 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 SLC35G2Q8TBE7 412 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 C18orf8Q96DM3 657 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 EIF2AK1Q9BQI3 630 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 TRIM7Q9C029 511 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 STXBP5LQ9Y2K9 1186 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 ATP8A1Q9Y2Q0 1164 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 CETN3O15182 167 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 SLITRK3O94933 977 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 GH2P01242 217 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 TUBBP07437 444 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 KCNJ1P48048 391 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 MRPL12P52815 198 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 CCDC38Q502W7 563 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 CCDC65Q8IXS2 484 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 IFT20Q8IY31 132 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 DYDC2Q96IM9 177 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 USP21Q9UK80 565 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 NOVA2Q9UNW9 492 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 ATAD5Q96QE3 1844 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 ZNFX1Q9P2E3 1918 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 IGLV3-22A0A075B6J6 115 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 KRIT1O00522 736 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 PPP1R37O75864 691 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 XRCC5P13010 732 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 ATP2B4P23634 1241 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 SLCO1A2P46721 670 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 TUBB4BP68371 445 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 SYT2Q8N9I0 419 aaPredicted RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 ATP6V1G3Q96LB4 118 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 FAM118BQ9BPY3 351 aa11.66□□□□□ -0.54
USP28-201ENST00000003302 TAF1DQ9H5J8 278 aaPredicted RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 DNAJC17Q9NVM6 304 aaKnown RBP11.66□□□□□ -0.54
USP28-201ENST00000003302 FOXN3O00409 490 aaPredicted RBP11.65□□□□□ -0.54
USP28-201ENST00000003302 CAND2O75155 1236 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 ERLIN2O94905 339 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 AFPP02771 609 aaKnown RBP11.65□□□□□ -0.54
USP28-201ENST00000003302 ARP10275 920 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 DAW1Q8N136 415 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 CERKQ8TCT0 537 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 HOOK2Q96ED9 719 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 GREB1LQ9C091 1923 aaPredicted RBP11.65□□□□□ -0.54
USP28-201ENST00000003302 ANKRD31Q8N7Z5 1873 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 CFBP00751 764 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 GUCY2CP25092 1073 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 SSTR3P32745 418 aaPredicted RBP11.65□□□□□ -0.54
USP28-201ENST00000003302 CRKP46108 304 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 SOX10P56693 466 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 MAGOHP61326 146 aaKnown RBP11.65□□□□□ -0.54
USP28-201ENST00000003302 IFI35P80217 286 aaPredicted RBP11.65□□□□□ -0.54
USP28-201ENST00000003302 EPC2Q52LR7 807 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 TTC27Q6P3X3 843 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 CCDC174Q6PII3 467 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 PRUNE1Q86TP1 453 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 MAGOHBQ96A72 148 aaKnown RBP11.65□□□□□ -0.54
USP28-201ENST00000003302 RUFY1Q96T51 708 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 HERPUD2Q9BSE4 406 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 SEPT11Q9NVA2 429 aaKnown RBP11.65□□□□□ -0.54
USP28-201ENST00000003302 TMEM110-MUSTN1A8MSY1 372 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 PPEF1O14829 653 aaPredicted RBP11.65□□□□□ -0.54
USP28-201ENST00000003302 TRIM37O94972 964 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 PSMD2Q13200 908 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 DRAP1Q14919 205 aaPredicted RBP11.65□□□□□ -0.54
USP28-201ENST00000003302 C15orf52Q6ZUT6 534 aaKnown RBP11.65□□□□□ -0.54
USP28-201ENST00000003302 ARHGEF19Q8IW93 802 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 RAB34Q9BZG1 259 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 ZNF287Q9HBT7 754 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 TMBIM4Q9HC24 238 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 PNMA2Q9UL42 364 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 TRAF3IP3Q9Y228 551 aa11.65□□□□□ -0.54
USP28-201ENST00000003302 GOLGA8KD6RF30 607 aa11.65□□□□□ -0.55
USP28-201ENST00000003302 F8VZ95 297 aa11.65□□□□□ -0.55
USP28-201ENST00000003302 CTNNA1P35221 906 aaKnown RBP11.65□□□□□ -0.55
USP28-201ENST00000003302 VPS72Q15906 364 aa11.65□□□□□ -0.55
USP28-201ENST00000003302 PEX26Q7Z412 305 aa11.65□□□□□ -0.55
USP28-201ENST00000003302 KIFC3Q9BVG8 833 aa11.65□□□□□ -0.55
USP28-201ENST00000003302 MLXIPLQ9NP71 852 aa11.65□□□□□ -0.55
USP28-201ENST00000003302 GPRC5CQ9NQ84 441 aa11.65□□□□□ -0.55
USP28-201ENST00000003302 ABCB11O95342 1321 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 O00370 1275 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 RPA1P27694 616 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 MDH1P40925 334 aaKnown RBP11.64□□□□□ -0.55
USP28-201ENST00000003302 SPP2Q13103 211 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 NLRP14Q86W24 1093 aa11.64□□□□□ -0.55
USP28-201ENST00000003302 FBXO25Q8TCJ0 367 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms