RNA–Protein interactions for RNA: ENST00000641597.1

PHGDH-223, Transcript of phosphoglycerate dehydrogenase, human

APPRIS P1 BASIC

Gene PHGDH, Length 2,585 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-223	ENST00000641597	DYDC2	Q96IM9	177 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	ZIM3	Q96PE6	472 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	SH2D3A	Q9BRG2	576 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	IDI2	Q9BXS1	227 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	NAGPA	Q9UK23	515 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	RAD51C	O43502	376 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	KRT27	Q7Z3Y8	459 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	SRL	Q86TD4	932 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	BANK1	Q8NDB2	785 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	ERMN	Q8TAM6	284 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	MASTL	Q96GX5	879 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	ZMYM2	Q9UBW7	1377 aa		18.42	■□□□□ 0.54
PHGDH-223	ENST00000641597	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	ALKBH5	Q6P6C2	394 aa	Known RBP	18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	RDH13	Q8NBN7	331 aa		18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	FAM76A	Q8TAV0	307 aa		18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	CCDC43	Q96MW1	224 aa	Known RBP	18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	18.41	■□□□□ 0.54	1e-6	■■■■■ 90
PHGDH-223	ENST00000641597	TBCA	O75347	108 aa	Known RBP	18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	SLITRK3	O94933	977 aa		18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	TRIM49	P0CI25	452 aa		18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	TRIM49C	P0CI26	452 aa		18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	ATP1A2	P50993	1020 aa		18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	EPHB4	P54760	987 aa		18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	MYCT1	Q8N699	235 aa		18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	NUCKS1	Q9H1E3	243 aa	Known RBP	18.41	■□□□□ 0.54
PHGDH-223	ENST00000641597	TISP43	B9A030	160 aa		18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	DDX39A	O00148	427 aa	Known RBP	18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	STRIP1	Q5VSL9	837 aa		18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	FRMD5	Q7Z6J6	570 aa		18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	NLGN1	Q8N2Q7	840 aa		18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	TMX4	Q9H1E5	349 aa	Predicted RBP	18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	FBXO28	Q9NVF7	368 aa		18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	SLX4	Q8IY92	1834 aa		18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	ITGA4	P13612	1032 aa		18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	CYP2J2	P51589	502 aa		18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	NAP1L4	Q99733	375 aa	Known RBP	18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	GLIS2	Q9BZE0	524 aa	Predicted RBP	18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	C10orf71	Q711Q0	1435 aa		18.4	■□□□□ 0.54
PHGDH-223	ENST00000641597	DDX3X	O00571	662 aa	Known RBP eCLIP	18.39	■□□□□ 0.54	7e-18	■■■□□ 16.8
PHGDH-223	ENST00000641597	PDXK	O00764	312 aa		18.39	■□□□□ 0.54
PHGDH-223	ENST00000641597	CEP104	O60308	925 aa		18.39	■□□□□ 0.54
PHGDH-223	ENST00000641597	RBM26	Q5T8P6	1007 aa	Known RBP	18.39	■□□□□ 0.54
PHGDH-223	ENST00000641597	OTOP1	Q7RTM1	612 aa		18.39	■□□□□ 0.54
PHGDH-223	ENST00000641597	GMCL1P1	Q8NEA9	526 aa		18.39	■□□□□ 0.54
PHGDH-223	ENST00000641597	HSD17B14	Q9BPX1	270 aa		18.39	■□□□□ 0.54
PHGDH-223	ENST00000641597	OSGEP	Q9NPF4	335 aa		18.39	■□□□□ 0.54
PHGDH-223	ENST00000641597	GDF3	Q9NR23	364 aa		18.39	■□□□□ 0.54
PHGDH-223	ENST00000641597	TYW1	Q9NV66	732 aa	Known RBP	18.39	■□□□□ 0.54
PHGDH-223	ENST00000641597	ZNF233	A6NK53	670 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	YDJC	A8MPS7	323 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	AR	P10275	920 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	PDE6B	P35913	854 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	IRAK1	P51617	712 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	CBWD6	Q4V339	395 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	CBWD3	Q5JTY5	395 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	CBWD5	Q5RIA9	395 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	MOXD1	Q6UVY6	613 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	PPP4R3CP	Q6ZMV5	832 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	PALB2	Q86YC2	1186 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	LRRC57	Q8N9N7	239 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	USP38	Q8NB14	1042 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	U2AF1L4	Q8WU68	220 aa	Known RBP	18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	PIK3R5	Q8WYR1	880 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	GMCL1	Q96IK5	515 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	DDX47	Q9H0S4	455 aa	Known RBP	18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	GLT8D2	Q9H1C3	349 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	BRWD3	Q6RI45	1802 aa		18.39	■□□□□ 0.53
PHGDH-223	ENST00000641597	RPS6KA1	Q15418	735 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	LRCH2	Q5VUJ6	765 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	MIGA2	Q7L4E1	593 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	GLYCTK	Q8IVS8	523 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	OLIG1	Q8TAK6	271 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	FAM20A	Q96MK3	541 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	SH3GL2	Q99962	352 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	TMEM51	Q9NW97	253 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	ATAD5	Q96QE3	1844 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	CALU	O43852	315 aa	Predicted RBP	18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	KIF4A	O95239	1232 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	EYA4	O95677	639 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	ERVK-9	P63128	1117 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	LNX1	Q8TBB1	728 aa	Predicted RBP	18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	CWC15	Q9P013	229 aa	Known RBP	18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	CHORDC1	Q9UHD1	332 aa	Predicted RBP	18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	IGSF9B	Q9UPX0	1349 aa		18.38	■□□□□ 0.53
PHGDH-223	ENST00000641597	TBX3	O15119	743 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	RPS6KA5	O75582	802 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	FAM13A	O94988	1023 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	EPB41	P11171	864 aa	Known RBP	18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	ABCB4	P21439	1286 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	CIITA	P33076	1130 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	COPB2	P35606	906 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	PDCL	Q13371	301 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	NAA35	Q5VZE5	725 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	EMB	Q6PCB8	327 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	C1orf186	Q6ZWK4	172 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	ADAT2	Q7Z6V5	191 aa	Known RBP	18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	METTL13	Q8N6R0	699 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	OR2W6P	Q8NHA6	318 aa		18.37	■□□□□ 0.53
PHGDH-223	ENST00000641597	BORCS6	Q96GS4	357 aa		18.37	■□□□□ 0.53

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