RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 MAFBQ9Y5Q3 323 aaPredicted RBP15.78■□□□□ 0.12
LINC00339-211ENST00000641009 KDM3AQ9Y4C1 1321 aa15.77■□□□□ 0.12
LINC00339-211ENST00000641009 DGKIO75912 1065 aa15.77■□□□□ 0.11
LINC00339-211ENST00000641009 BTG3Q14201 252 aaPredicted RBP15.77■□□□□ 0.11
LINC00339-211ENST00000641009 SMAP1Q8IYB5 467 aaPredicted RBP15.77■□□□□ 0.11
LINC00339-211ENST00000641009 KIAA0319LQ8IZA0 1049 aa15.77■□□□□ 0.11
LINC00339-211ENST00000641009 ZNF274Q96GC6 653 aaPredicted RBP15.77■□□□□ 0.11
LINC00339-211ENST00000641009 PPP1R16BQ96T49 567 aa15.77■□□□□ 0.11
LINC00339-211ENST00000641009 TM6SF1Q9BZW5 370 aa15.77■□□□□ 0.11
LINC00339-211ENST00000641009 TMX1Q9H3N1 280 aa15.77■□□□□ 0.11
LINC00339-211ENST00000641009 GABBR1Q9UBS5 961 aa15.77■□□□□ 0.11
LINC00339-211ENST00000641009 SAMM50Q9Y512 469 aa15.77■□□□□ 0.11
LINC00339-211ENST00000641009 PCDHA10Q9Y5I2 948 aa15.77■□□□□ 0.11
LINC00339-211ENST00000641009 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.76■□□□□ 0.11
LINC00339-211ENST00000641009 CPLX1O14810 134 aa15.76■□□□□ 0.11
LINC00339-211ENST00000641009 MSH4O15457 936 aa15.76■□□□□ 0.11
LINC00339-211ENST00000641009 C22orf31O95567 290 aa15.76■□□□□ 0.11
LINC00339-211ENST00000641009 PSAPP07602 524 aa15.76■□□□□ 0.11
LINC00339-211ENST00000641009 NFX1Q12986 1120 aaKnown RBP15.76■□□□□ 0.11
LINC00339-211ENST00000641009 CRIPAKQ8N1N5 446 aa15.76■□□□□ 0.11
LINC00339-211ENST00000641009 BANK1Q8NDB2 785 aa15.76■□□□□ 0.11
LINC00339-211ENST00000641009 TMEM40Q8WWA1 233 aa15.76■□□□□ 0.11
LINC00339-211ENST00000641009 BBXQ8WY36 941 aaPredicted RBP15.76■□□□□ 0.11
LINC00339-211ENST00000641009 CLP1Q92989 425 aaKnown RBP15.76■□□□□ 0.11
LINC00339-211ENST00000641009 GJA10Q969M2 543 aa15.76■□□□□ 0.11
LINC00339-211ENST00000641009 AIFM3Q96NN9 605 aa15.76■□□□□ 0.11
LINC00339-211ENST00000641009 C5orf67F2Z3F1 127 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 IBSPP21815 317 aaPredicted RBP15.75■□□□□ 0.11
LINC00339-211ENST00000641009 KCNA5P22460 613 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 BMPR1AP36894 532 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 USP11P51784 963 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 TIGD5Q53EQ6 642 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 TCEAL5Q5H9L2 206 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 NPAS4Q8IUM7 802 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 TBCKQ8TEA7 893 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 ERVK-5Q9HDB9 667 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 PDRG1Q9NUG6 133 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 PCDHA4Q9UN74 947 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 NOC2LQ9Y3T9 749 aaKnown RBP15.75■□□□□ 0.11
LINC00339-211ENST00000641009 TRIOO75962 3097 aa15.75■□□□□ 0.11
LINC00339-211ENST00000641009 WDR64B1ANS9 1081 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 GRM6O15303 877 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 CHMP2AO43633 222 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 MGEA5O60502 916 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 RPS6KA5O75582 802 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 DEXIO95424 95 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 VTNP04004 478 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 KIZQ2M2Z5 673 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 PAN2Q504Q3 1202 aaKnown RBP15.74■□□□□ 0.11
LINC00339-211ENST00000641009 METTL13Q8N6R0 699 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 OSMRQ99650 979 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 C11orf84Q9BUA3 381 aaPredicted RBP15.74■□□□□ 0.11
LINC00339-211ENST00000641009 DISC1Q9NRI5 854 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 RWDD3Q9Y3V2 267 aa15.74■□□□□ 0.11
LINC00339-211ENST00000641009 MRPL42Q9Y6G3 142 aaKnown RBP15.74■□□□□ 0.11
LINC00339-211ENST00000641009 M0R2N6 131 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 ZNF862O60290 1169 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 GAS7O60861 476 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 CSPG5O95196 566 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 TDP2O95551 362 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 RB1P06400 928 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 GATMP50440 423 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 CLCN3P51790 818 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 NPY5RQ15761 445 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 UGCGQ16739 394 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 LRCH2Q5VUJ6 765 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 BLIDQ8IZY5 108 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 SLC5A5Q92911 643 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 UNC45AQ9H3U1 944 aa15.73■□□□□ 0.11
LINC00339-211ENST00000641009 NSUN3Q9H649 340 aaKnown RBP15.73■□□□□ 0.11
LINC00339-211ENST00000641009 DTNBO60941 627 aa15.72■□□□□ 0.11
LINC00339-211ENST00000641009 GPR32O75388 356 aa15.72■□□□□ 0.11
LINC00339-211ENST00000641009 OATP04181 439 aa15.72■□□□□ 0.11
LINC00339-211ENST00000641009 STAG3L1P0CL83 205 aa15.72■□□□□ 0.11
LINC00339-211ENST00000641009 LEXMQ3ZCV2 418 aa15.72■□□□□ 0.11
LINC00339-211ENST00000641009 CPLX2Q6PUV4 134 aaKnown RBP15.72■□□□□ 0.11
LINC00339-211ENST00000641009 CMTR2Q8IYT2 770 aaKnown RBP15.72■□□□□ 0.11
LINC00339-211ENST00000641009 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.72■□□□□ 0.11
LINC00339-211ENST00000641009 FAM167AQ96KS9 214 aa15.72■□□□□ 0.11
LINC00339-211ENST00000641009 RIT2Q99578 217 aa15.72■□□□□ 0.11
LINC00339-211ENST00000641009 TEKT3Q9BXF9 490 aa15.72■□□□□ 0.11
LINC00339-211ENST00000641009 ALG13Q9NP73 1137 aaKnown RBP15.72■□□□□ 0.11
LINC00339-211ENST00000641009 LRFN2Q9ULH4 789 aa15.72■□□□□ 0.11
LINC00339-211ENST00000641009 ST3GAL5Q9UNP4 418 aa15.72■□□□□ 0.11
LINC00339-211ENST00000641009 CEP131Q9UPN4 1083 aa15.72■□□□□ 0.11
LINC00339-211ENST00000641009 DENND3A2RUS2 1198 aa15.71■□□□□ 0.11
LINC00339-211ENST00000641009 H3BQ06 376 aaPredicted RBP15.71■□□□□ 0.11
LINC00339-211ENST00000641009 SARSP49591 514 aaKnown RBP15.71■□□□□ 0.11
LINC00339-211ENST00000641009 CRYBB1P53674 252 aaPredicted RBP15.71■□□□□ 0.11
LINC00339-211ENST00000641009 PRKCEQ02156 737 aa15.71■□□□□ 0.11
LINC00339-211ENST00000641009 SCRN1Q12765 414 aa15.71■□□□□ 0.11
LINC00339-211ENST00000641009 Q4G0T1 1027 aa15.71■□□□□ 0.11
LINC00339-211ENST00000641009 EFCAB12Q6NXP0 572 aa15.71■□□□□ 0.11
LINC00339-211ENST00000641009 EP400NLQ6ZTU2 488 aa15.71■□□□□ 0.11
LINC00339-211ENST00000641009 FAM228AQ86W67 206 aa15.71■□□□□ 0.11
LINC00339-211ENST00000641009 LRRC71Q8N4P6 559 aa15.71■□□□□ 0.11
LINC00339-211ENST00000641009 DAGLBQ8NCG7 672 aa15.71■□□□□ 0.11
LINC00339-211ENST00000641009 ADAM2Q99965 735 aa15.71■□□□□ 0.11
LINC00339-211ENST00000641009 KCNJ14Q9UNX9 436 aa15.71■□□□□ 0.11
LINC00339-211ENST00000641009 AKT3Q9Y243 479 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms