RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 GPR87Q9BY21 358 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 SLC29A3Q9BZD2 475 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 RSAD1Q9HA92 442 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 MRS2Q9HD23 443 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 ALG13Q9NP73 1137 aaKnown RBP1.19□□□□□ -2.22
VPS35-212ENST00000640313 SYBUQ9NX95 663 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 PCDHB10Q9UN67 800 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 TELO2Q9Y4R8 837 aa1.19□□□□□ -2.22
VPS35-212ENST00000640313 A0A0G2JNJ9 132 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 LTFP02788 710 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 NAT2P11245 290 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 ZEB1P37275 1124 aaPredicted RBP1.18□□□□□ -2.22
VPS35-212ENST00000640313 ZNF81P51508 661 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 IL13RA1P78552 427 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 SAFB2Q14151 953 aaKnown RBP eCLIP1.18□□□□□ -2.22
VPS35-212ENST00000640313 ERCC6LQ2NKX8 1250 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 TIGD2Q4W5G0 525 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 PLEKHG4Q58EX7 1191 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 FBXW10Q5XX13 1052 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 TMEM200BQ69YZ2 307 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 DENND5AQ6IQ26 1287 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 ZNF425Q6IV72 752 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 FBXO33Q7Z6M2 555 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 RBM12BQ8IXT5 1001 aaKnown RBP1.18□□□□□ -2.22
VPS35-212ENST00000640313 BOLLQ8N9W6 283 aaKnown RBP1.18□□□□□ -2.22
VPS35-212ENST00000640313 SIMC1Q8NDZ2 872 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 SUPT20HQ8NEM7 779 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 OR14K1Q8NGZ2 314 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 LINC00476Q8WZB0 136 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 LPPQ93052 612 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 MYEOVQ96EZ4 313 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 ZNF778Q96MU6 729 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 JAM3Q9BX67 310 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 SLC39A2Q9NP94 309 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 Q9UFV3 132 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 PPT2Q9UMR5 302 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 EPN1Q9Y6I3 576 aaPredicted RBP1.18□□□□□ -2.22
VPS35-212ENST00000640313 IVNS1ABPQ9Y6Y0 642 aa1.18□□□□□ -2.22
VPS35-212ENST00000640313 CENPVL1A0A0U1RR11 272 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 A0A1W2PRX2 142 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 TMEM200CA6NKL6 621 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 TRIM38O00635 465 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 SNRPB2P08579 225 aaKnown RBP1.17□□□□□ -2.22
VPS35-212ENST00000640313 LAG3P18627 525 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 ZFP36P26651 326 aaKnown RBP1.17□□□□□ -2.22
VPS35-212ENST00000640313 CCKBRP32239 447 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 ECI1P42126 302 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 ABCG1P45844 678 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 AVPR1BP47901 424 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 PTH2RP49190 550 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 ADCY7P51828 1080 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 ST5P78524 1137 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 SPIRE1Q08AE8 756 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 COL9A2Q14055 689 aaPredicted RBP1.17□□□□□ -2.22
VPS35-212ENST00000640313 ELAVL1Q15717 326 aaKnown RBP1.17□□□□□ -2.22
VPS35-212ENST00000640313 C1QL3Q5VWW1 255 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 SP5Q6BEB4 398 aaPredicted RBP1.17□□□□□ -2.22
VPS35-212ENST00000640313 KIAA1211LQ6NV74 962 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 FAM111BQ6SJ93 734 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 KCTD1Q719H9 257 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 PPIL6Q8IXY8 311 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 RTKN2Q8IZC4 609 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 OR6P1Q8NGX9 317 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 BTBD2Q9BX70 525 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 SERHL2Q9H4I8 314 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 KMT5AQ9NQR1 393 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 GPR27Q9NS67 375 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 GALNT8Q9NY28 637 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 CDC42EP3Q9UKI2 254 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 DSEQ9UL01 958 aa1.17□□□□□ -2.22
VPS35-212ENST00000640313 CTDP1Q9Y5B0 961 aaPredicted RBP1.17□□□□□ -2.22
VPS35-212ENST00000640313 CNTNAP2Q9UHC6 1331 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 ARHGEF17Q96PE2 2063 aaPredicted RBP1.16□□□□□ -2.22
VPS35-212ENST00000640313 CGB1A6NKQ9 187 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 CYSRT1A8MQ03 144 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 MAN2B1O00754 1011 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 TRIM24O15164 1050 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 NKRFO15226 690 aaKnown RBP eCLIP1.16□□□□□ -2.22
VPS35-212ENST00000640313 MFAP3LO75121 409 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 MAFO75444 373 aaPredicted RBP1.16□□□□□ -2.22
VPS35-212ENST00000640313 MATN4O95460 622 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 IGLV2-14P01704 120 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 CAPNS1P04632 268 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 COL6A2P12110 1019 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 PTGS1P23219 599 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 CXCR5P32302 372 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 ADCY8P40145 1251 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 GIPRP48546 466 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 SEC24CP53992 1094 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 CASP7P55210 303 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 ATP2C1P98194 919 aaPredicted RBP1.16□□□□□ -2.22
VPS35-212ENST00000640313 CD83Q01151 205 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 KCNA1Q09470 495 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 FOXI1Q12951 378 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 FKBP15Q5T1M5 1219 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 SLC35F1Q5T1Q4 408 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 KANK2Q63ZY3 851 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 MFSD5Q6N075 450 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 CCDC62Q6P9F0 684 aa1.16□□□□□ -2.22
VPS35-212ENST00000640313 VHLLQ6RSH7 139 aa1.16□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms