RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TDRD5Q8NAT2 981 aaKnown RBP18.79■□□□□ 0.6
CLN3-264ENST00000637985 GIMAP8Q8ND71 665 aaPredicted RBP18.79■□□□□ 0.6
CLN3-264ENST00000637985 RTP3Q9BQQ7 232 aa18.79■□□□□ 0.6
CLN3-264ENST00000637985 CELF4Q9BZC1 486 aaKnown RBP18.79■□□□□ 0.6
CLN3-264ENST00000637985 CWH43Q9H720 699 aa18.79■□□□□ 0.6
CLN3-264ENST00000637985 ENTPD7Q9NQZ7 604 aa18.79■□□□□ 0.6
CLN3-264ENST00000637985 HCFC2Q9Y5Z7 792 aa18.79■□□□□ 0.6
CLN3-264ENST00000637985 KDM3AQ9Y4C1 1321 aa18.78■□□□□ 0.6
CLN3-264ENST00000637985 RRN3P2A6NIE6 340 aa18.78■□□□□ 0.6
CLN3-264ENST00000637985 M0QZ92 97 aa18.78■□□□□ 0.6
CLN3-264ENST00000637985 LAG3P18627 525 aa18.78■□□□□ 0.6
CLN3-264ENST00000637985 PDE4AP27815 886 aa18.78■□□□□ 0.6
CLN3-264ENST00000637985 IGBP1P78318 339 aa18.78■□□□□ 0.6
CLN3-264ENST00000637985 TRAF1Q13077 416 aa18.78■□□□□ 0.6
CLN3-264ENST00000637985 PLCD3Q8N3E9 789 aa18.78■□□□□ 0.6
CLN3-264ENST00000637985 SEPT1Q8WYJ6 367 aa18.78■□□□□ 0.6
CLN3-264ENST00000637985 USTQ9Y2C2 406 aa18.78■□□□□ 0.6
CLN3-264ENST00000637985 MGEA5O60502 916 aa18.77■□□□□ 0.6
CLN3-264ENST00000637985 INSRRP14616 1297 aa18.77■□□□□ 0.6
CLN3-264ENST00000637985 IBSPP21815 317 aaPredicted RBP18.77■□□□□ 0.6
CLN3-264ENST00000637985 TMEM266Q2M3C6 531 aa18.77■□□□□ 0.6
CLN3-264ENST00000637985 SLC35G1Q2M3R5 365 aa18.77■□□□□ 0.6
CLN3-264ENST00000637985 TTC22Q5TAA0 569 aa18.77■□□□□ 0.6
CLN3-264ENST00000637985 GLG1Q92896 1179 aa18.77■□□□□ 0.6
CLN3-264ENST00000637985 SMARCAD1Q9H4L7 1026 aa18.77■□□□□ 0.6
CLN3-264ENST00000637985 RNF216Q9NWF9 866 aaPredicted RBP18.77■□□□□ 0.6
CLN3-264ENST00000637985 ZSWIM5Q9P217 1185 aa18.77■□□□□ 0.6
CLN3-264ENST00000637985 MAD2L2Q9UI95 211 aa18.77■□□□□ 0.6
CLN3-264ENST00000637985 PALM3A6NDB9 673 aaPredicted RBP18.76■□□□□ 0.59
CLN3-264ENST00000637985 B4E1Z4 1266 aa18.76■□□□□ 0.59
CLN3-264ENST00000637985 ATP9AO75110 1047 aa18.76■□□□□ 0.59
CLN3-264ENST00000637985 WEE2P0C1S8 567 aa18.76■□□□□ 0.59
CLN3-264ENST00000637985 IRX6P78412 446 aaPredicted RBP18.76■□□□□ 0.59
CLN3-264ENST00000637985 NFX1Q12986 1120 aaKnown RBP18.76■□□□□ 0.59
CLN3-264ENST00000637985 IMMTQ16891 758 aaKnown RBP18.76■□□□□ 0.59
CLN3-264ENST00000637985 PCNX4Q63HM2 1172 aa18.76■□□□□ 0.59
CLN3-264ENST00000637985 SLC24A5Q71RS6 500 aa18.76■□□□□ 0.59
CLN3-264ENST00000637985 HOMER1Q86YM7 354 aa18.76■□□□□ 0.59
CLN3-264ENST00000637985 PIGSQ96S52 555 aa18.76■□□□□ 0.59
CLN3-264ENST00000637985 ERVK-5Q9HDB9 667 aa18.76■□□□□ 0.59
CLN3-264ENST00000637985 RGS18Q9NS28 235 aa18.76■□□□□ 0.59
CLN3-264ENST00000637985 C1orf112Q9NSG2 853 aa18.76■□□□□ 0.59
CLN3-264ENST00000637985 PCDHA2Q9Y5H9 948 aa18.76■□□□□ 0.59
CLN3-264ENST00000637985 BAZ2BQ9UIF8 2168 aaKnown RBP18.76■□□□□ 0.59
CLN3-264ENST00000637985 C9IYK1 514 aa18.75■□□□□ 0.59
CLN3-264ENST00000637985 GSPT1P15170 499 aaKnown RBP18.75■□□□□ 0.59
CLN3-264ENST00000637985 KCNA2P16389 499 aa18.75■□□□□ 0.59
CLN3-264ENST00000637985 KIAA1841Q6NSI8 718 aa18.75■□□□□ 0.59
CLN3-264ENST00000637985 XRRA1Q6P2D8 792 aa18.75■□□□□ 0.59
CLN3-264ENST00000637985 NLRX1Q86UT6 975 aa18.75■□□□□ 0.59
CLN3-264ENST00000637985 MRPL43Q8N983 215 aaKnown RBP18.75■□□□□ 0.59
CLN3-264ENST00000637985 CYP2W1Q8TAV3 490 aa18.75■□□□□ 0.59
CLN3-264ENST00000637985 ADAM2Q99965 735 aa18.75■□□□□ 0.59
CLN3-264ENST00000637985 RIOX1Q9H6W3 641 aa18.75■□□□□ 0.59
CLN3-264ENST00000637985 CYP26B1Q9NR63 512 aa18.75■□□□□ 0.59
CLN3-264ENST00000637985 SPTBN2O15020 2390 aa18.75■□□□□ 0.59
CLN3-264ENST00000637985 C2orf71A6NGG8 1288 aa18.74■□□□□ 0.59
CLN3-264ENST00000637985 CLASP2O75122 1294 aaKnown RBP18.74■□□□□ 0.59
CLN3-264ENST00000637985 EOMESO95936 686 aa18.74■□□□□ 0.59
CLN3-264ENST00000637985 KRT76Q01546 638 aa18.74■□□□□ 0.59
CLN3-264ENST00000637985 ATAT1Q5SQI0 421 aa18.74■□□□□ 0.59
CLN3-264ENST00000637985 TMC7Q7Z402 723 aa18.74■□□□□ 0.59
CLN3-264ENST00000637985 NME8Q8N427 588 aa18.74■□□□□ 0.59
CLN3-264ENST00000637985 DBR1Q9UK59 544 aaKnown RBP18.74■□□□□ 0.59
CLN3-264ENST00000637985 R4GN57 208 aa18.74■□□□□ 0.59
CLN3-264ENST00000637985 CFAP47Q6ZTR5 3102 aa18.74■□□□□ 0.59
CLN3-264ENST00000637985 FGFR1P11362 822 aa18.73■□□□□ 0.59
CLN3-264ENST00000637985 FAM189BP81408 668 aa18.73■□□□□ 0.59
CLN3-264ENST00000637985 KRT17Q04695 432 aa18.73■□□□□ 0.59
CLN3-264ENST00000637985 TDGQ13569 410 aa18.73■□□□□ 0.59
CLN3-264ENST00000637985 RARS2Q5T160 578 aaKnown RBP18.73■□□□□ 0.59
CLN3-264ENST00000637985 KCNT2Q6UVM3 1135 aa18.73■□□□□ 0.59
CLN3-264ENST00000637985 LRRC55Q6ZSA7 311 aa18.73■□□□□ 0.59
CLN3-264ENST00000637985 C12orf76Q8N812 135 aaPredicted RBP18.73■□□□□ 0.59
CLN3-264ENST00000637985 RUFY2Q8WXA3 655 aa18.73■□□□□ 0.59
CLN3-264ENST00000637985 KRT23Q9C075 422 aa18.73■□□□□ 0.59
CLN3-264ENST00000637985 CNNM2Q9H8M5 875 aa18.73■□□□□ 0.59
CLN3-264ENST00000637985 TMEM161AQ9NX61 479 aa18.73■□□□□ 0.59
CLN3-264ENST00000637985 PNMA6FA0A0J9YX94 578 aa18.72■□□□□ 0.59
CLN3-264ENST00000637985 SMIM35A0A1B0GVV1 85 aa18.72■□□□□ 0.59
CLN3-264ENST00000637985 DENND3A2RUS2 1198 aa18.72■□□□□ 0.59
CLN3-264ENST00000637985 PPM1AP35813 382 aa18.72■□□□□ 0.59
CLN3-264ENST00000637985 SMC1AQ14683 1233 aaKnown RBP18.72■□□□□ 0.59
CLN3-264ENST00000637985 IFIT1BQ5T764 474 aaKnown RBP18.72■□□□□ 0.59
CLN3-264ENST00000637985 SIX5Q8N196 739 aa18.72■□□□□ 0.59
CLN3-264ENST00000637985 TRAPPC12Q8WVT3 735 aa18.72■□□□□ 0.59
CLN3-264ENST00000637985 RUBCNQ92622 972 aa18.72■□□□□ 0.59
CLN3-264ENST00000637985 GPRASP2Q96D09 838 aa18.72■□□□□ 0.59
CLN3-264ENST00000637985 PCYT2Q99447 389 aa18.72■□□□□ 0.59
CLN3-264ENST00000637985 ELAC1Q9H777 363 aaKnown RBP18.72■□□□□ 0.59
CLN3-264ENST00000637985 ATP6V0A4Q9HBG4 840 aa18.72■□□□□ 0.59
CLN3-264ENST00000637985 DUSP12Q9UNI6 340 aa18.72■□□□□ 0.59
CLN3-264ENST00000637985 NOC2LQ9Y3T9 749 aaKnown RBP18.72■□□□□ 0.59
CLN3-264ENST00000637985 FANCMQ8IYD8 2048 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 CYTH3O43739 400 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 RPS6KA5O75582 802 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 KANK3Q6NY19 840 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 DCLK2Q8N568 766 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 TMEM40Q8WWA1 233 aa18.71■□□□□ 0.59
CLN3-264ENST00000637985 TNPO1Q92973 898 aaKnown RBP18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms