RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 MGAMO43451 1857 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 LGR5O75473 907 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 FAM13AO94988 1023 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 IGHA2P01877 340 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 ATP1A3P13637 1013 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 ADCYAP1R1P41586 468 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 PMS1P54277 932 aaKnown RBP20.42■□□□□ 0.86
CLN3-254ENST00000637050 LACTBP83111 547 aaPredicted RBP20.42■□□□□ 0.86
CLN3-254ENST00000637050 LAMC2Q13753 1193 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 CENPPQ6IPU0 288 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 TTI2Q6NXR4 508 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 MYOCDQ8IZQ8 938 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 EMID1Q96A84 441 aaPredicted RBP20.42■□□□□ 0.86
CLN3-254ENST00000637050 TRIM5Q9C035 493 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 PARVGQ9HBI0 331 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 SAMSN1Q9NSI8 373 aaKnown RBP20.42■□□□□ 0.86
CLN3-254ENST00000637050 FLRT1Q9NZU1 646 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 TBC1D7Q9P0N9 293 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 SEL1LQ9UBV2 794 aa20.42■□□□□ 0.86
CLN3-254ENST00000637050 BICDL2A1A5D9 508 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 TRIM49BA6NDI0 452 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 NOP56O00567 594 aaKnown RBP20.41■□□□□ 0.86
CLN3-254ENST00000637050 USO1O60763 962 aaKnown RBP20.41■□□□□ 0.86
CLN3-254ENST00000637050 HIP1RO75146 1068 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 GH1P01241 217 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 OATP04181 439 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 CYP2B6P20813 491 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 MAP2K2P36507 400 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 STAT5BP51692 787 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 FCGRTP55899 365 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 LRRC41Q15345 812 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 TRMT1LQ7Z2T5 733 aaKnown RBP20.41■□□□□ 0.86
CLN3-254ENST00000637050 DAW1Q8N136 415 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 CEP170P1Q96L14 293 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 SH2D3AQ9BRG2 576 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 POLD4Q9HCU8 107 aa20.41■□□□□ 0.86
CLN3-254ENST00000637050 SFI1A8K8P3 1242 aa20.4■□□□□ 0.86
CLN3-254ENST00000637050 PSMC4P43686 418 aa20.4■□□□□ 0.86
CLN3-254ENST00000637050 ZNF75DP51815 510 aa20.4■□□□□ 0.86
CLN3-254ENST00000637050 DUSP28Q4G0W2 176 aa20.4■□□□□ 0.86
CLN3-254ENST00000637050 CDKAL1Q5VV42 579 aa20.4■□□□□ 0.86
CLN3-254ENST00000637050 IQSEC1Q6DN90 963 aa20.4■□□□□ 0.86
CLN3-254ENST00000637050 EPM2AIP1Q7L775 607 aaPredicted RBP20.4■□□□□ 0.86
CLN3-254ENST00000637050 NIFKQ9BYG3 293 aaKnown RBP20.4■□□□□ 0.86
CLN3-254ENST00000637050 SEMA6BQ9H3T3 888 aa20.4■□□□□ 0.86
CLN3-254ENST00000637050 CYP26B1Q9NR63 512 aa20.4■□□□□ 0.86
CLN3-254ENST00000637050 SEPT9Q9UHD8 586 aaPredicted RBP20.4■□□□□ 0.86
CLN3-254ENST00000637050 ARID2Q68CP9 1835 aa20.4■□□□□ 0.86
CLN3-254ENST00000637050 EMSYQ7Z589 1322 aa20.4■□□□□ 0.86
CLN3-254ENST00000637050 MYH9P35579 1960 aaKnown RBP20.4■□□□□ 0.86
CLN3-254ENST00000637050 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.39■□□□□ 0.86
CLN3-254ENST00000637050 KIF20AO95235 890 aa20.39■□□□□ 0.86
CLN3-254ENST00000637050 CCL14Q16627 93 aa20.39■□□□□ 0.86
CLN3-254ENST00000637050 GJC2Q5T442 439 aaPredicted RBP20.39■□□□□ 0.86
CLN3-254ENST00000637050 ANKRD40Q6AI12 368 aa20.39■□□□□ 0.86
CLN3-254ENST00000637050 FOXR2Q6PJQ5 311 aa20.39■□□□□ 0.86
CLN3-254ENST00000637050 MYCT1Q8N699 235 aa20.39■□□□□ 0.86
CLN3-254ENST00000637050 SCFD1Q8WVM8 642 aa20.39■□□□□ 0.86
CLN3-254ENST00000637050 TRIM47Q96LD4 638 aa20.39■□□□□ 0.86
CLN3-254ENST00000637050 DUSP9Q99956 384 aaKnown RBP20.39■□□□□ 0.86
CLN3-254ENST00000637050 ARHGAP39Q9C0H5 1083 aa20.39■□□□□ 0.86
CLN3-254ENST00000637050 AZI2Q9H6S1 392 aa20.39■□□□□ 0.86
CLN3-254ENST00000637050 ZHX1Q9UKY1 873 aaPredicted RBP20.39■□□□□ 0.86
CLN3-254ENST00000637050 NKRFO15226 690 aaKnown RBP eCLIP20.38■□□□□ 0.85
CLN3-254ENST00000637050 TBC1D8O95759 1140 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 SMPD1P17405 629 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 VEGFBP49765 207 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 CASP5P51878 434 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 FANCCQ00597 558 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 TPD52L1Q16890 204 aaPredicted RBP20.38■□□□□ 0.85
CLN3-254ENST00000637050 CCDC144BQ3MJ40 725 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 PLPPR4Q7Z2D5 763 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 FIZ1Q96SL8 496 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 MRPL44Q9H9J2 332 aaKnown RBP20.38■□□□□ 0.85
CLN3-254ENST00000637050 PDLIM7Q9NR12 457 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 DGAT1O75907 488 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 XRCC5P13010 732 aaKnown RBP20.38■□□□□ 0.85
CLN3-254ENST00000637050 PTGS1P23219 599 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 PPTC7Q8NI37 304 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 MRFAP1L1Q96HT8 127 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 DRC1Q96MC2 740 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 NRBP2Q9NSY0 501 aa20.38■□□□□ 0.85
CLN3-254ENST00000637050 ZSWIM8A7E2V4 1837 aa20.37■□□□□ 0.85
CLN3-254ENST00000637050 ZNF865P0CJ78 1059 aaPredicted RBP20.37■□□□□ 0.85
CLN3-254ENST00000637050 LRRC63Q05C16 580 aa20.37■□□□□ 0.85
CLN3-254ENST00000637050 BMT2Q1RMZ1 405 aa20.37■□□□□ 0.85
CLN3-254ENST00000637050 ZCWPW2Q504Y3 356 aa20.37■□□□□ 0.85
CLN3-254ENST00000637050 HSP90AA4PQ58FG1 418 aa20.37■□□□□ 0.85
CLN3-254ENST00000637050 ODR4Q5SWX8 454 aa20.37■□□□□ 0.85
CLN3-254ENST00000637050 NOC3LQ8WTT2 800 aaKnown RBP20.37■□□□□ 0.85
CLN3-254ENST00000637050 FAM167AQ96KS9 214 aa20.37■□□□□ 0.85
CLN3-254ENST00000637050 CEP89Q96ST8 783 aa20.37■□□□□ 0.85
CLN3-254ENST00000637050 THAP9Q9H5L6 903 aa20.37■□□□□ 0.85
CLN3-254ENST00000637050 RNF186Q9NXI6 227 aa20.37■□□□□ 0.85
CLN3-254ENST00000637050 LARSQ9P2J5 1176 aaKnown RBP20.37■□□□□ 0.85
CLN3-254ENST00000637050 MYBP10242 640 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 CDK11BP21127 795 aaKnown RBP20.36■□□□□ 0.85
CLN3-254ENST00000637050 CYP2C19P33261 490 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 SLC26A2P50443 739 aa20.36■□□□□ 0.85
CLN3-254ENST00000637050 SP3Q02447 781 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms