RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PPP4CP60510 307 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 CYP27A1Q02318 531 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 LCE2DQ5TA82 110 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 LRIG3Q6UXM1 1119 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 LRRC31Q6UY01 552 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 SLFN12Q8IYM2 578 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 NME8Q8N427 588 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 NEDD1Q8NHV4 660 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 AENQ8WTP8 325 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 TGFBRAP1Q8WUH2 860 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 IFT81Q8WYA0 676 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 CALR3Q96L12 384 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 CEP89Q96ST8 783 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 MXD3Q9BW11 206 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 TTYH3Q9C0H2 523 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 ZHX3Q9H4I2 956 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 MTMR10Q9NXD2 777 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 ROBO3Q96MS0 1386 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 PAPPA2Q9BXP8 1791 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 CCDC188H7C350 402 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 NFKBIEO00221 500 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 CES2O00748 559 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 NMT2O60551 498 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 N4BP1O75113 896 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 HEXIM1O94992 359 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 CYP2D6P10635 497 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 CCT5P48643 541 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 IFFO1Q0D2I5 559 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 GPATCH4Q5T3I0 446 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 ICE2Q659A1 982 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 DPY19L2P1Q6NXN4 242 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 DPP8Q6V1X1 898 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 MMS22LQ6ZRQ5 1243 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 CCDC121Q6ZUS5 278 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 TBC1D5Q92609 795 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 PPP2R3CQ969Q6 453 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 ZBTB9Q96C00 473 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 PARK7Q99497 189 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 DUSP9Q99956 384 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 TMEM60Q9H2L4 133 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 EHMT1Q9H9B1 1298 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 AGPAT5Q9NUQ2 364 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 PANK4Q9NVE7 773 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 TRIM10Q9UDY6 481 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 MAD2L2Q9UI95 211 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 DIS3Q9Y2L1 958 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 ZNF541Q9H0D2 1346 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 DICER1Q9UPY3 1922 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 LRRC53A6NM62 1247 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 TMCO5BA8MYB1 307 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 AOC2O75106 756 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 ATP2B4P23634 1241 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 MAP2K5Q13163 448 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 DRP2Q13474 957 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 BIRC3Q13489 604 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 WDR59Q6PJI9 974 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 C3orf67Q6ZVT6 689 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 OTOP1Q7RTM1 612 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 DYMQ7RTS9 669 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 HOOK3Q86VS8 718 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 C3orf20Q8ND61 904 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 HERVK_113Q902F9 699 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 VTI1AQ96AJ9 217 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 PLCB1Q9NQ66 1216 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 ATP6V0A2Q9Y487 856 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 RPS6KL1Q9Y6S9 549 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 ATXN2Q99700 1313 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 PP2D1A8MPX8 630 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 GFPT2O94808 682 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 LCA5LO95447 670 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 PRDX5P30044 214 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 SKOR1P84550 965 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 CETN1Q12798 172 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 STK4Q13043 487 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 NAALADL2Q58DX5 795 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 HERC4Q5GLZ8 1057 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 RNF187Q5TA31 235 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 RASAL3Q86YV0 1011 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 MAPKAPK5Q8IW41 473 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 SUGP1Q8IWZ8 645 aaKnown RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 KCTD17Q8N5Z5 321 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 P3H4Q92791 437 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 CCDC43Q96MW1 224 aaKnown RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 UHRF1Q96T88 793 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 NSRP1Q9H0G5 558 aaKnown RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 RAB17Q9H0T7 212 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 CENPHQ9H3R5 247 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 SUGCTQ9HAC7 445 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 FAM114A2Q9NRY5 505 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 DDX25Q9UHL0 483 aaKnown RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 MGAMO43451 1857 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 PGRMC1O00264 195 aaKnown RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 SHOX2O60902 331 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-214ENST00000637038 ZMYND10O75800 440 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 NR1D1P20393 614 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 BTDP43251 543 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 CDK8P49336 464 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 IRAK1P51617 712 aa4.34□□□□□ -1.71
SCN1A-214ENST00000637038 MNAT1P51948 309 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms