RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 GCNT3O95395 438 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 GGPS1O95749 300 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 MSNP26038 577 aaKnown RBP18.65■□□□□ 0.58
CLN3-252ENST00000636907 HOXD13P35453 343 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 LRMPQ12912 555 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 BMT2Q1RMZ1 405 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 LRRC55Q6ZSA7 311 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 ARMCX2Q7L311 632 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 MAEAQ7L5Y9 396 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 FAM114A1Q8IWE2 563 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 FIZ1Q96SL8 496 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 CPA4Q9UI42 421 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 IGSF9BQ9UPX0 1349 aa18.65■□□□□ 0.58
CLN3-252ENST00000636907 MCM3APO60318 1980 aa18.64■□□□□ 0.58
CLN3-252ENST00000636907 KIF3CO14782 793 aa18.64■□□□□ 0.57
CLN3-252ENST00000636907 N4BP3O15049 544 aa18.64■□□□□ 0.57
CLN3-252ENST00000636907 NMT1P30419 496 aaKnown RBP18.64■□□□□ 0.57
CLN3-252ENST00000636907 GSDMDP57764 484 aa18.64■□□□□ 0.57
CLN3-252ENST00000636907 PRKCEQ02156 737 aa18.64■□□□□ 0.57
CLN3-252ENST00000636907 KCNV1Q6PIU1 500 aa18.64■□□□□ 0.57
CLN3-252ENST00000636907 OTUD6AQ7L8S5 288 aa18.64■□□□□ 0.57
CLN3-252ENST00000636907 ZCCHC17Q9NP64 241 aaKnown RBP18.64■□□□□ 0.57
CLN3-252ENST00000636907 SEL1LQ9UBV2 794 aa18.64■□□□□ 0.57
CLN3-252ENST00000636907 GSTTP1A0A1W2PQM5 241 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 FAM155AB1AL88 458 aaPredicted RBP18.63■□□□□ 0.57
CLN3-252ENST00000636907 FGFR1OPO95684 399 aaKnown RBP18.63■□□□□ 0.57
CLN3-252ENST00000636907 PBX1P40424 430 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 GRB14Q14449 540 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 TAF1CQ15572 869 aaPredicted RBP18.63■□□□□ 0.57
CLN3-252ENST00000636907 METTL7BQ6UX53 244 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 PLEKHH3Q7Z736 793 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 LRRC8AQ8IWT6 810 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 ZNF507Q8TCN5 953 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 ZNF302Q9NR11 478 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 IGKV6D-21A0A0A0MT36 114 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 MAPK4P31152 587 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 KNOP1Q1ED39 458 aaKnown RBP18.63■□□□□ 0.57
CLN3-252ENST00000636907 ODR4Q5SWX8 454 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 SPECC1LQ69YQ0 1117 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 ARMCX5Q6P1M9 558 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 CCDC62Q6P9F0 684 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 FAM178BQ8IXR5 827 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 CEP170P1Q96L14 293 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 MLXIPQ9HAP2 919 aa18.63■□□□□ 0.57
CLN3-252ENST00000636907 RRAGDQ9NQL2 400 aaPredicted RBP18.63■□□□□ 0.57
CLN3-252ENST00000636907 SEPT9Q9UHD8 586 aaPredicted RBP18.63■□□□□ 0.57
CLN3-252ENST00000636907 MAFBQ9Y5Q3 323 aaPredicted RBP18.63■□□□□ 0.57
CLN3-252ENST00000636907 ARID2Q68CP9 1835 aa18.62■□□□□ 0.57
CLN3-252ENST00000636907 NKRFO15226 690 aaKnown RBP eCLIP18.62■□□□□ 0.57
CLN3-252ENST00000636907 EIF3DO15371 548 aaKnown RBP eCLIP18.62■□□□□ 0.57
CLN3-252ENST00000636907 ATP4AP20648 1035 aa18.62■□□□□ 0.57
CLN3-252ENST00000636907 FKBP3Q00688 224 aaKnown RBP18.62■□□□□ 0.57
CLN3-252ENST00000636907 TBX2Q13207 712 aaPredicted RBP18.62■□□□□ 0.57
CLN3-252ENST00000636907 ZNF720Q7Z2F6 126 aa18.62■□□□□ 0.57
CLN3-252ENST00000636907 IFNL1Q8IU54 200 aa18.62■□□□□ 0.57
CLN3-252ENST00000636907 SMC1BQ8NDV3 1235 aa18.62■□□□□ 0.57
CLN3-252ENST00000636907 PCYT2Q99447 389 aa18.62■□□□□ 0.57
CLN3-252ENST00000636907 TUBGCP2Q9BSJ2 902 aa18.62■□□□□ 0.57
CLN3-252ENST00000636907 TIPINQ9BVW5 301 aa18.62■□□□□ 0.57
CLN3-252ENST00000636907 PDGFCQ9NRA1 345 aa18.62■□□□□ 0.57
CLN3-252ENST00000636907 MYH11P35749 1972 aa18.61■□□□□ 0.57
CLN3-252ENST00000636907 PRKCSHP14314 528 aaPredicted RBP18.61■□□□□ 0.57
CLN3-252ENST00000636907 MTIF2P46199 727 aaKnown RBP18.61■□□□□ 0.57
CLN3-252ENST00000636907 KCNA1Q09470 495 aa18.61■□□□□ 0.57
CLN3-252ENST00000636907 ZC2HC1CQ53FD0 456 aaPredicted RBP18.61■□□□□ 0.57
CLN3-252ENST00000636907 XKR3Q5GH77 459 aa18.61■□□□□ 0.57
CLN3-252ENST00000636907 CELF3Q5SZQ8 465 aaKnown RBP18.61■□□□□ 0.57
CLN3-252ENST00000636907 TMEM63BQ5T3F8 832 aa18.61■□□□□ 0.57
CLN3-252ENST00000636907 PPP4R3CPQ6ZMV5 832 aa18.61■□□□□ 0.57
CLN3-252ENST00000636907 ZNF467Q7Z7K2 595 aaPredicted RBP18.61■□□□□ 0.57
CLN3-252ENST00000636907 DPP9Q86TI2 863 aa18.61■□□□□ 0.57
CLN3-252ENST00000636907 ZC3H3Q8IXZ2 948 aaKnown RBP18.61■□□□□ 0.57
CLN3-252ENST00000636907 CCDC150Q8NCX0 1101 aa18.61■□□□□ 0.57
CLN3-252ENST00000636907 GPRC5CQ9NQ84 441 aa18.61■□□□□ 0.57
CLN3-252ENST00000636907 ABT1Q9ULW3 272 aaKnown RBP18.61■□□□□ 0.57
CLN3-252ENST00000636907 PYCARDQ9ULZ3 195 aa18.61■□□□□ 0.57
CLN3-252ENST00000636907 TRAF3IP3Q9Y228 551 aa18.61■□□□□ 0.57
CLN3-252ENST00000636907 LGALS16A8MUM7 142 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 PLS3P13797 630 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 INHBEP58166 350 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 UBXN1Q04323 297 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 TTLL4Q14679 1199 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 EDRF1Q3B7T1 1238 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 FAM102BQ5T8I3 360 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 SEPT1Q8WYJ6 367 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 COPS5Q92905 334 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 CCDC102AQ96A19 550 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 CYP26B1Q9NR63 512 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 TYW1Q9NV66 732 aaKnown RBP18.6■□□□□ 0.57
CLN3-252ENST00000636907 ZMYM2Q9UBW7 1377 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 UBE4BO95155 1302 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 PDXKO00764 312 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 OATP04181 439 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 TXNP10599 105 aaKnown RBP18.6■□□□□ 0.57
CLN3-252ENST00000636907 TCF7P36402 384 aaPredicted RBP18.6■□□□□ 0.57
CLN3-252ENST00000636907 TAPT1Q6NXT6 567 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 KSR1Q8IVT5 923 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 SCFD2Q8WU76 684 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 DRC1Q96MC2 740 aa18.6■□□□□ 0.57
CLN3-252ENST00000636907 CEP63Q96MT8 703 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms