RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 EIF4A3P38919 411 aaKnown RBP17.2■□□□□ 0.34
CLN3-251ENST00000636853 POLR2FP61218 127 aaKnown RBP17.2■□□□□ 0.34
CLN3-251ENST00000636853 PADI6Q6TGC4 694 aa17.2■□□□□ 0.34
CLN3-251ENST00000636853 ZNF720Q7Z2F6 126 aa17.2■□□□□ 0.34
CLN3-251ENST00000636853 UBXN4Q92575 508 aa17.2■□□□□ 0.34
CLN3-251ENST00000636853 KCND2Q9NZV8 630 aa17.2■□□□□ 0.34
CLN3-251ENST00000636853 CEP72Q9P209 647 aa17.2■□□□□ 0.34
CLN3-251ENST00000636853 MYO1AQ9UBC5 1043 aa17.2■□□□□ 0.34
CLN3-251ENST00000636853 ODF2LQ9ULJ1 636 aa17.2■□□□□ 0.34
CLN3-251ENST00000636853 GUCY2CP25092 1073 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 RPL13P26373 211 aaKnown RBP17.19■□□□□ 0.34
CLN3-251ENST00000636853 MAPK7Q13164 816 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 DCAF17Q5H9S7 520 aaPredicted RBP17.19■□□□□ 0.34
CLN3-251ENST00000636853 CATSPERGQ6ZRH7 1159 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 DAW1Q8N136 415 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 NAPGQ99747 312 aaPredicted RBP17.19■□□□□ 0.34
CLN3-251ENST00000636853 TBC1D22BQ9NU19 505 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 TMOD4Q9NZQ9 345 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 SEL1LQ9UBV2 794 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 ADAMTS5Q9UNA0 930 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 AFG3L2Q9Y4W6 797 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 PCDHB13Q9Y5F0 798 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 DUSP10Q9Y6W6 482 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 LOXHD1Q8IVV2 1947 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 TMEM150BA6NC51 233 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 USP2O75604 605 aaPredicted RBP17.19■□□□□ 0.34
CLN3-251ENST00000636853 QARSP47897 775 aaKnown RBP17.19■□□□□ 0.34
CLN3-251ENST00000636853 KIF11P52732 1056 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 UGCGQ16739 394 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 SUPT20HL1Q3ZLR7 823 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 FBXO38Q6PIJ6 1188 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 UPF1Q92900 1129 aaKnown RBP eCLIP17.19■□□□□ 0.34
CLN3-251ENST00000636853 EDEM3Q9BZQ6 932 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 DEF6Q9H4E7 631 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 PPP2R3BQ9Y5P8 575 aa17.19■□□□□ 0.34
CLN3-251ENST00000636853 SBF1O95248 1867 aa17.18■□□□□ 0.34
CLN3-251ENST00000636853 EFCAB8A8MWE9 144 aa17.18■□□□□ 0.34
CLN3-251ENST00000636853 TFRCP02786 760 aaKnown RBP17.18■□□□□ 0.34
CLN3-251ENST00000636853 EPB41P11171 864 aaKnown RBP17.18■□□□□ 0.34
CLN3-251ENST00000636853 XRCC5P13010 732 aaKnown RBP17.18■□□□□ 0.34
CLN3-251ENST00000636853 PLS1Q14651 629 aa17.18■□□□□ 0.34
CLN3-251ENST00000636853 SPA17Q15506 151 aa17.18■□□□□ 0.34
CLN3-251ENST00000636853 TCERG1LQ5VWI1 586 aa17.18■□□□□ 0.34
CLN3-251ENST00000636853 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.18■□□□□ 0.34
CLN3-251ENST00000636853 CCNE2O96020 404 aa17.18■□□□□ 0.34
CLN3-251ENST00000636853 AFPP02771 609 aaKnown RBP17.18■□□□□ 0.34
CLN3-251ENST00000636853 ACTN1P12814 892 aa17.18■□□□□ 0.34
CLN3-251ENST00000636853 RARRES1P49788 294 aa17.18■□□□□ 0.34
CLN3-251ENST00000636853 EPC1Q9H2F5 836 aa17.18■□□□□ 0.34
CLN3-251ENST00000636853 CDC23Q9UJX2 597 aa17.18■□□□□ 0.34
CLN3-251ENST00000636853 KRT86O43790 486 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 AKR1B10O60218 316 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 NR3C2P08235 984 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 SLC9A1P19634 815 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 CCND2P30279 289 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 OAZ1P54368 228 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 FAM193AP78312 1265 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 NOL9Q5SY16 702 aaKnown RBP17.17■□□□□ 0.34
CLN3-251ENST00000636853 ZNF662Q6ZS27 426 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 VSIG10LQ86VR7 867 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 SRCAPQ6ZRS2 3230 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 TLR2O60603 784 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 USO1O60763 962 aaKnown RBP17.17■□□□□ 0.34
CLN3-251ENST00000636853 YWHABP31946 246 aaKnown RBP17.17■□□□□ 0.34
CLN3-251ENST00000636853 VAV2P52735 878 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 VGLL4Q14135 290 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 SFMBT2Q5VUG0 894 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 HGSNATQ68CP4 663 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 GANQ9H2C0 597 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 TCEAL9Q9UHQ7 104 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 PUF60Q9UHX1 559 aaKnown RBP17.17■□□□□ 0.34
CLN3-251ENST00000636853 DDX41Q9UJV9 622 aaKnown RBP17.17■□□□□ 0.34
CLN3-251ENST00000636853 PCDHA13Q9Y5I0 950 aa17.17■□□□□ 0.34
CLN3-251ENST00000636853 SPDYE16A6NNV3 312 aaPredicted RBP17.16■□□□□ 0.34
CLN3-251ENST00000636853 ENC1O14682 589 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 SLC16A3O15427 465 aaKnown RBP17.16■□□□□ 0.34
CLN3-251ENST00000636853 TDRD12Q587J7 1177 aaKnown RBP17.16■□□□□ 0.34
CLN3-251ENST00000636853 TEX35Q5T0J7 233 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.16■□□□□ 0.34
CLN3-251ENST00000636853 STXBP4Q6ZWJ1 553 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 CNKSR2Q8WXI2 1034 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 TEX13BQ9BXU2 312 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 IFIH1Q9BYX4 1025 aaKnown RBP17.16■□□□□ 0.34
CLN3-251ENST00000636853 FHDC1Q9C0D6 1143 aaPredicted RBP17.16■□□□□ 0.34
CLN3-251ENST00000636853 METTL14Q9HCE5 456 aaKnown RBP17.16■□□□□ 0.34
CLN3-251ENST00000636853 DBR1Q9UK59 544 aaKnown RBP17.16■□□□□ 0.34
CLN3-251ENST00000636853 KIAA1217Q5T5P2 1943 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 MACROD2A1Z1Q3 448 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 WDR64B1ANS9 1081 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 ADM5C9JUS6 153 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 PEX10O60683 326 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 CYP2J2P51589 502 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 ARID5AQ03989 594 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 GFPT1Q06210 699 aaPredicted RBP17.16■□□□□ 0.34
CLN3-251ENST00000636853 KIF5AQ12840 1032 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 SLC35C1Q96A29 364 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 BORCS6Q96GS4 357 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 A1CFQ9NQ94 594 aaKnown RBP17.16■□□□□ 0.34
CLN3-251ENST00000636853 SNCAIPQ9Y6H5 919 aa17.16■□□□□ 0.34
CLN3-251ENST00000636853 K7ENM7 598 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms