RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 ATP4AP20648 1035 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 BMP6P22004 513 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 RARRES1P49788 294 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 STAT5BP51692 787 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 STX1AQ16623 288 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 XKR3Q5GH77 459 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 FAM160B1Q5W0V3 765 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 RINT1Q6NUQ1 792 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 C1orf186Q6ZWK4 172 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 OTUD6AQ7L8S5 288 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 GPBP1Q86WP2 473 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 RMND1Q9NWS8 449 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 EMSYQ7Z589 1322 aa15.71■□□□□ 0.11
CLN3-242ENST00000635958 RHOBTB3O94955 611 aa15.71■□□□□ 0.1
CLN3-242ENST00000635958 SSBP05455 408 aaKnown RBP eCLIP15.71■□□□□ 0.1
CLN3-242ENST00000635958 SLC26A2P50443 739 aa15.71■□□□□ 0.1
CLN3-242ENST00000635958 UNC13DQ70J99 1090 aa15.71■□□□□ 0.1
CLN3-242ENST00000635958 ANO5Q75V66 913 aa15.71■□□□□ 0.1
CLN3-242ENST00000635958 TRPV1Q8NER1 839 aa15.71■□□□□ 0.1
CLN3-242ENST00000635958 FRMD3A2A2Y4 597 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 A6NJR5 290 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 BIN1O00499 593 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 HSPA8P11142 646 aaKnown RBP15.7■□□□□ 0.1
CLN3-242ENST00000635958 PTGS1P23219 599 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 ASIC1P78348 528 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 EHHADHQ08426 723 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 GIT2Q14161 759 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 AFG1LQ8WV93 481 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 NIFKQ9BYG3 293 aaKnown RBP15.7■□□□□ 0.1
CLN3-242ENST00000635958 GTPBP4Q9BZE4 634 aaKnown RBP15.7■□□□□ 0.1
CLN3-242ENST00000635958 ZMYND15Q9H091 742 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 SMARCAD1Q9H4L7 1026 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 AZI2Q9H6S1 392 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 PRDM10Q9NQV6 1147 aa15.7■□□□□ 0.1
CLN3-242ENST00000635958 ARHGEF35A5YM69 484 aa15.69■□□□□ 0.1
CLN3-242ENST00000635958 ADCY3O60266 1144 aa15.69■□□□□ 0.1
CLN3-242ENST00000635958 AKR1A1P14550 325 aa15.69■□□□□ 0.1
CLN3-242ENST00000635958 GUCY2CP25092 1073 aa15.69■□□□□ 0.1
CLN3-242ENST00000635958 PLCB2Q00722 1185 aa15.69■□□□□ 0.1
CLN3-242ENST00000635958 PRKCEQ02156 737 aa15.69■□□□□ 0.1
CLN3-242ENST00000635958 CACNB2Q08289 660 aaPredicted RBP15.69■□□□□ 0.1
CLN3-242ENST00000635958 KMT5BQ4FZB7 885 aa15.69■□□□□ 0.1
CLN3-242ENST00000635958 SARM1Q6SZW1 724 aa15.69■□□□□ 0.1
CLN3-242ENST00000635958 DYMQ7RTS9 669 aa15.69■□□□□ 0.1
CLN3-242ENST00000635958 OR6J1Q8NGC5 347 aa15.69■□□□□ 0.1
CLN3-242ENST00000635958 RUSC1Q9BVN2 902 aa15.69■□□□□ 0.1
CLN3-242ENST00000635958 DYNC1LI2O43237 492 aaPredicted RBP15.68■□□□□ 0.1
CLN3-242ENST00000635958 DUSP11O75319 330 aaKnown RBP15.68■□□□□ 0.1
CLN3-242ENST00000635958 OATP04181 439 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 LBX1P52954 281 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 DPCR1Q3MIW9 517 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 CT47A1Q5JQC4 288 aaPredicted RBP15.68■□□□□ 0.1
CLN3-242ENST00000635958 MAP3K21Q5TCX8 1036 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 ZNF658Q5TYW1 1059 aaPredicted RBP15.68■□□□□ 0.1
CLN3-242ENST00000635958 PADI6Q6TGC4 694 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 MLKLQ8NB16 471 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 CCDC47Q96A33 483 aaKnown RBP15.68■□□□□ 0.1
CLN3-242ENST00000635958 FAM167AQ96KS9 214 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 ZNF830Q96NB3 372 aaPredicted RBP15.68■□□□□ 0.1
CLN3-242ENST00000635958 NRBP2Q9NSY0 501 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 PAXBP1Q9Y5B6 917 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 SEPT4O43236 478 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 HMGCRP04035 888 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 ELNP15502 786 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 NKX3-2P78367 333 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 PSMD2Q13200 908 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 ANO6Q4KMQ2 910 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 XKR9Q5GH70 373 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 UTP14CQ5TAP6 766 aaKnown RBP15.68■□□□□ 0.1
CLN3-242ENST00000635958 ISM2Q6H9L7 571 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 TNS4Q8IZW8 715 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 RAET1EQ8TD07 263 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 REEP2Q9BRK0 252 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 TIPINQ9BVW5 301 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 CBX8Q9HC52 389 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 PDLIM7Q9NR12 457 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 ODF2LQ9ULJ1 636 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 PPME1Q9Y570 386 aa15.68■□□□□ 0.1
CLN3-242ENST00000635958 NPHP3-ACAD11A0A0J9YXS1 232 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 MMP3P08254 477 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 ZNF75DP51815 510 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 NPEPPSP55786 919 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 TRIM32Q13049 653 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 TARBP2Q15633 366 aaKnown RBP15.67■□□□□ 0.1
CLN3-242ENST00000635958 TLK2Q86UE8 772 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 CCDC65Q8IXS2 484 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 ATP8B4Q8TF62 1192 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 BBXQ8WY36 941 aaPredicted RBP15.67■□□□□ 0.1
CLN3-242ENST00000635958 GLG1Q92896 1179 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 CEP89Q96ST8 783 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 C16orf70Q9BSU1 422 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 DNAJC25Q9H1X3 360 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 CYP26B1Q9NR63 512 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 PANK4Q9NVE7 773 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 TSKSQ9UJT2 592 aa15.67■□□□□ 0.1
CLN3-242ENST00000635958 TMEM150BA6NC51 233 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 LGALS2P05162 132 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 KRT18P05783 430 aaKnown RBP15.66■□□□□ 0.1
CLN3-242ENST00000635958 ZNF131P52739 623 aa15.66■□□□□ 0.1
CLN3-242ENST00000635958 DGKDQ16760 1214 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms