RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 PTCRAQ6ISU1 281 aaPredicted RBP13.51□□□□□ -0.25
UPF3B-204ENST00000619445 CKAP2LQ8IYA6 745 aa13.51□□□□□ -0.25
UPF3B-204ENST00000619445 PRKAG3Q9UGI9 489 aa13.51□□□□□ -0.25
UPF3B-204ENST00000619445 LRFN2Q9ULH4 789 aa13.51□□□□□ -0.25
UPF3B-204ENST00000619445 ARIH1Q9Y4X5 557 aaPredicted RBP13.51□□□□□ -0.25
UPF3B-204ENST00000619445 PCDHA10Q9Y5I2 948 aa13.51□□□□□ -0.25
UPF3B-204ENST00000619445 WDR64B1ANS9 1081 aa13.5□□□□□ -0.25
UPF3B-204ENST00000619445 DHX15O43143 795 aaKnown RBP13.5□□□□□ -0.25
UPF3B-204ENST00000619445 RPS6KA5O75582 802 aa13.5□□□□□ -0.25
UPF3B-204ENST00000619445 MMP1P03956 469 aa13.5□□□□□ -0.25
UPF3B-204ENST00000619445 TMOD1P28289 359 aa13.5□□□□□ -0.25
UPF3B-204ENST00000619445 USP11P51784 963 aa13.5□□□□□ -0.25
UPF3B-204ENST00000619445 CSPP1Q1MSJ5 1256 aa13.5□□□□□ -0.25
UPF3B-204ENST00000619445 TCEAL5Q5H9L2 206 aa13.5□□□□□ -0.25
UPF3B-204ENST00000619445 SWSAP1Q6NVH7 229 aa13.5□□□□□ -0.25
UPF3B-204ENST00000619445 CPLX2Q6PUV4 134 aaKnown RBP13.5□□□□□ -0.25
UPF3B-204ENST00000619445 CCDC60Q8IWA6 550 aaPredicted RBP13.5□□□□□ -0.25
UPF3B-204ENST00000619445 FAM178BQ8IXR5 827 aa13.5□□□□□ -0.25
UPF3B-204ENST00000619445 AAASQ9NRG9 546 aa13.5□□□□□ -0.25
UPF3B-204ENST00000619445 MAFBQ9Y5Q3 323 aaPredicted RBP13.5□□□□□ -0.25
UPF3B-204ENST00000619445 DENND3A2RUS2 1198 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 GRXCR2A6NFK2 248 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 DDX39AO00148 427 aaKnown RBP13.49□□□□□ -0.25
UPF3B-204ENST00000619445 HOXD11P31277 338 aaPredicted RBP13.49□□□□□ -0.25
UPF3B-204ENST00000619445 SFNP31947 248 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 SARSP49591 514 aaKnown RBP13.49□□□□□ -0.25
UPF3B-204ENST00000619445 CRYBB1P53674 252 aaPredicted RBP13.49□□□□□ -0.25
UPF3B-204ENST00000619445 TMEM62Q0P6H9 643 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 PKN1Q16512 942 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 PRR16Q569H4 304 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 TMEM31Q5JXX7 168 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 GALNT17Q6IS24 598 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 KIAA0319LQ8IZA0 1049 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 GJD3Q8N144 294 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 CRIPAKQ8N1N5 446 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.49□□□□□ -0.25
UPF3B-204ENST00000619445 TRAPPC12Q8WVT3 735 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 RIT2Q99578 217 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 NRBP2Q9NSY0 501 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 SAMM50Q9Y512 469 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 PCDHB7Q9Y5E2 793 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 WDR81Q562E7 1941 aa13.49□□□□□ -0.25
UPF3B-204ENST00000619445 CPLX1O14810 134 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 LINC00271P0C7V0 271 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 ALADP13716 330 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 JAK3P52333 1124 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 CDC42EP1Q00587 391 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 UBE3AQ05086 875 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 NFX1Q12986 1120 aaKnown RBP13.48□□□□□ -0.25
UPF3B-204ENST00000619445 NTRK3Q16288 839 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 SLC24A5Q71RS6 500 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 RDM1Q8NG50 284 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 LINC01599Q8WXQ3 324 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 MAP7D2Q96T17 732 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 POP1Q99575 1024 aaKnown RBP13.48□□□□□ -0.25
UPF3B-204ENST00000619445 SLC26A6Q9BXS9 759 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 ERVK-5Q9HDB9 667 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 CLDND1Q9NY35 253 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 PLAGL2Q9UPG8 496 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 GINS2Q9Y248 185 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 PCDHB12Q9Y5F1 795 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 CYP46A1Q9Y6A2 500 aa13.48□□□□□ -0.25
UPF3B-204ENST00000619445 PI4K2BG5E9Z4 385 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 GRM6O15303 877 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 HOXA2O43364 376 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 GPR37L1O60883 481 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 C22orf31O95567 290 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 CPA1P15085 419 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 PDIA3P30101 505 aaKnown RBP13.47□□□□□ -0.25
UPF3B-204ENST00000619445 SSTR3P32745 418 aaPredicted RBP13.47□□□□□ -0.25
UPF3B-204ENST00000619445 NLRP5P59047 1200 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 CTC1Q2NKJ3 1217 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 EP400NLQ6ZTU2 488 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 RUFY3Q7L099 469 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 RTN4RL1Q86UN2 441 aaPredicted RBP13.47□□□□□ -0.25
UPF3B-204ENST00000619445 METTL13Q8N6R0 699 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 RSPH1Q8WYR4 309 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 PHKBQ93100 1093 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 ZNF274Q96GC6 653 aaPredicted RBP13.47□□□□□ -0.25
UPF3B-204ENST00000619445 UPF3BQ9BZI7 483 aaKnown RBP13.47□□□□□ -0.25
UPF3B-204ENST00000619445 TM6SF1Q9BZW5 370 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 ELAC1Q9H777 363 aaKnown RBP13.47□□□□□ -0.25
UPF3B-204ENST00000619445 RGS18Q9NS28 235 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 HCN4Q9Y3Q4 1203 aa13.47□□□□□ -0.25
UPF3B-204ENST00000619445 MRPL42Q9Y6G3 142 aaKnown RBP13.47□□□□□ -0.25
UPF3B-204ENST00000619445 ZBTB42B2RXF5 422 aa13.46□□□□□ -0.25
UPF3B-204ENST00000619445 GAS7O60861 476 aa13.46□□□□□ -0.25
UPF3B-204ENST00000619445 DEXIO95424 95 aa13.46□□□□□ -0.25
UPF3B-204ENST00000619445 SSRP1Q08945 709 aaKnown RBP13.46□□□□□ -0.25
UPF3B-204ENST00000619445 PDE12Q6L8Q7 609 aaKnown RBP13.46□□□□□ -0.25
UPF3B-204ENST00000619445 SKAP1Q86WV1 359 aa13.46□□□□□ -0.25
UPF3B-204ENST00000619445 ZBTB10Q96DT7 871 aa13.46□□□□□ -0.25
UPF3B-204ENST00000619445 TMX1Q9H3N1 280 aa13.46□□□□□ -0.25
UPF3B-204ENST00000619445 ZSWIM6Q9HCJ5 1215 aa13.46□□□□□ -0.25
UPF3B-204ENST00000619445 DISC1Q9NRI5 854 aa13.46□□□□□ -0.25
UPF3B-204ENST00000619445 TMEM161AQ9NX61 479 aa13.46□□□□□ -0.25
UPF3B-204ENST00000619445 GABBR1Q9UBS5 961 aa13.46□□□□□ -0.25
UPF3B-204ENST00000619445 ST3GAL5Q9UNP4 418 aa13.46□□□□□ -0.25
UPF3B-204ENST00000619445 NOC2LQ9Y3T9 749 aaKnown RBP13.46□□□□□ -0.25
UPF3B-204ENST00000619445 FNDC1Q4ZHG4 1894 aaPredicted RBP13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms