RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 ATP9AO75110 1047 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 GNA14O95837 355 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 MTMR1Q13613 665 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 EDRF1Q3B7T1 1238 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 EPM2AIP1Q7L775 607 aaPredicted RBP13.63□□□□□ -0.23
CIITA-212ENST00000618207 CAGE1Q8TC20 777 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 SYTL5Q8TDW5 730 aaPredicted RBP13.63□□□□□ -0.23
CIITA-212ENST00000618207 TRERF1Q96PN7 1200 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 SPAG5Q96R06 1193 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 NACC1Q96RE7 527 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 PNKPQ96T60 521 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 RMDN3Q96TC7 470 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 PCIF1Q9H4Z3 704 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 MYO1AQ9UBC5 1043 aa13.63□□□□□ -0.23
CIITA-212ENST00000618207 TKFCQ3LXA3 575 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 SYCP3Q8IZU3 236 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 TRPM4Q8TD43 1214 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 RABGGTAQ92696 567 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 CCDC43Q96MW1 224 aaKnown RBP13.62□□□□□ -0.23
CIITA-212ENST00000618207 MMS19Q96T76 1030 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 MTFR1LQ9H019 292 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 KIAA1683Q9H0B3 1180 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 SUGCTQ9HAC7 445 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 SLC38A10Q9HBR0 1119 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 TYW1Q9NV66 732 aaKnown RBP13.62□□□□□ -0.23
CIITA-212ENST00000618207 SMARCAL1Q9NZC9 954 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 CEP72Q9P209 647 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 TCEAL9Q9UHQ7 104 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 FHOD1Q9Y613 1164 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 NCK2O43639 380 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 CTNND1O60716 968 aaKnown RBP13.62□□□□□ -0.23
CIITA-212ENST00000618207 HIP1RO75146 1068 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 ZMYND10O75800 440 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 EPB41P11171 864 aaKnown RBP13.62□□□□□ -0.23
CIITA-212ENST00000618207 HSD17B4P51659 736 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 AMPD2Q01433 879 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 KLHL30Q0D2K2 578 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 EXOC3L4Q17RC7 722 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 SLC9C1Q4G0N8 1177 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 HGSNATQ68CP4 663 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 VPS33BQ9H267 617 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 ANKZF1Q9H8Y5 726 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 TRAF3IP3Q9Y228 551 aa13.62□□□□□ -0.23
CIITA-212ENST00000618207 FER1L6Q2WGJ9 1857 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 PDXKO00764 312 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 AFPP02771 609 aaKnown RBP13.61□□□□□ -0.23
CIITA-212ENST00000618207 TRIM49P0CI25 452 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 TRIM49CP0CI26 452 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 MATR3P43243 847 aaKnown RBP eCLIP13.61□□□□□ -0.23
CIITA-212ENST00000618207 MAP3K10Q02779 954 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 BAATQ14032 418 aaPredicted RBP13.61□□□□□ -0.23
CIITA-212ENST00000618207 EPHA7Q15375 998 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 ARHGEF16Q5VV41 709 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 RNF207Q6ZRF8 634 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 GPRC5CQ9NQ84 441 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 EHD2Q9NZN4 543 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 PPP1R9AQ9ULJ8 1098 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 NPEPPSP55786 919 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 ZNF280AP59817 542 aaPredicted RBP13.61□□□□□ -0.23
CIITA-212ENST00000618207 SETQ01105 290 aaPredicted RBP13.61□□□□□ -0.23
CIITA-212ENST00000618207 PLA2G4FQ68DD2 849 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 PADI6Q6TGC4 694 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 PPP4R3CPQ6ZMV5 832 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 LPAR1Q92633 364 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 PACSIN1Q9BY11 444 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 PICK1Q9NRD5 415 aa13.61□□□□□ -0.23
CIITA-212ENST00000618207 POLR2AP24928 1970 aaKnown RBP13.6□□□□□ -0.23
CIITA-212ENST00000618207 A0A087X0T9 212 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 K7ENM7 598 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 PLA2G6O60733 806 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 ZBED4O75132 1171 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 FAM228BP0C875 321 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 RPL13P26373 211 aaKnown RBP13.6□□□□□ -0.23
CIITA-212ENST00000618207 HNRNPH3P31942 346 aaKnown RBP13.6□□□□□ -0.23
CIITA-212ENST00000618207 UGCGQ16739 394 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 TAF3Q5VWG9 929 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 CC2D1AQ6P1N0 951 aaPredicted RBP13.6□□□□□ -0.23
CIITA-212ENST00000618207 TRAPPC11Q7Z392 1133 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 KRT222Q8N1A0 295 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 GGA3Q9NZ52 723 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 GCNT4Q9P109 453 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 AJAP1Q9UKB5 411 aaPredicted RBP13.6□□□□□ -0.23
CIITA-212ENST00000618207 STK24Q9Y6E0 443 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 KIF13BQ9NQT8 1826 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 SASH3O75995 380 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 BMS1Q14692 1282 aaKnown RBP13.6□□□□□ -0.23
CIITA-212ENST00000618207 SNRNP48Q6IEG0 339 aaKnown RBP13.6□□□□□ -0.23
CIITA-212ENST00000618207 ZNF720Q7Z2F6 126 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 MCF2L2Q86YR7 1114 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 FAM186BQ8IYM0 893 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 ARFGAP3Q9NP61 516 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 RNF146Q9NTX7 359 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 FAM184BQ9ULE4 1060 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 TELO2Q9Y4R8 837 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 ZMYM2Q9UBW7 1377 aa13.6□□□□□ -0.23
CIITA-212ENST00000618207 VWA5AO00534 786 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 UCHL3P15374 230 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 PON1P27169 355 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 CDK17Q00537 523 aa13.59□□□□□ -0.23
CIITA-212ENST00000618207 PGM5Q15124 567 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms