RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 NBPF12Q5TAG4 269 aaPredicted RBP15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 EEPD1Q7L9B9 569 aa15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 IL31RAQ8NI17 732 aa15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 ARL8AQ96BM9 186 aa15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 TAF1LQ8IZX4 1826 aa15.83■□□□□ 0.12
SHROOM1-208ENST00000617339 SLX4Q8IY92 1834 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 GMPSP49915 693 aaPredicted RBP15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 KIF11P52732 1056 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 PPFIA1Q13136 1202 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 MTMR2Q13614 643 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 ARHGAP44Q17R89 818 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 CAMKK2Q96RR4 588 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 WRNIP1Q96S55 665 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 RGS17Q9UGC6 210 aaPredicted RBP15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 PDE2AO00408 941 aaPredicted RBP15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 ATP2C2O75185 946 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 SPATA31C1P0DKV0 1188 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 SOX10P56693 466 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 KCNH2Q12809 1159 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 SWT1Q5T5J6 900 aaKnown RBP15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 CHORDC1Q9UHD1 332 aaPredicted RBP15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 PVALEFA0A1B0GWK0 134 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 ZNF263O14978 683 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 FTCDO95954 541 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 TRIM49P0CI25 452 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 TRIM49CP0CI26 452 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 TUBB4BP68371 445 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 ODR4Q5SWX8 454 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 SLFN12Q8IYM2 578 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 FAM151AQ8WW52 585 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 HYOU1Q9Y4L1 999 aa15.82■□□□□ 0.12
SHROOM1-208ENST00000617339 CEP350Q5VT06 3117 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 hCG_1984214I3L0E3 225 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 USO1O60763 962 aaKnown RBP15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 TUBBP07437 444 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 GCFC2P16383 781 aaKnown RBP15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 USP11P51784 963 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 TRAPPC11Q7Z392 1133 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 CEP57Q86XR8 500 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 ZNF713Q8N859 430 aaPredicted RBP15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 CHURC1Q8WUH1 139 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 MKL1Q969V6 931 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 CCDC51Q96ER9 411 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 VIPAS39Q9H9C1 493 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 ZHX2Q9Y6X8 837 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 GOLGA8IPA6NC78 632 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 GOLGA8JA6NMD2 632 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 EIF3HO15372 352 aaKnown RBP eCLIP15.81■□□□□ 0.122e-6■■■□□ 15.9
SHROOM1-208ENST00000617339 FGFR1OPO95684 399 aaKnown RBP15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 KRT83P78385 493 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 TNFAIP1Q13829 316 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 GIT2Q14161 759 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 WNK4Q96J92 1243 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 MYOZ2Q9NPC6 264 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 CAPN6Q9Y6Q1 641 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 NAV1Q8NEY1 1877 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 THSD7AQ9UPZ6 1657 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 BACH1O14867 736 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 ENTPD3O75355 529 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 MYL1P05976 194 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 TRIM14Q14142 442 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 CCNI2Q6ZMN8 369 aaPredicted RBP15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 PACSIN1Q9BY11 444 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 RNF181Q9P0P0 153 aa15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 ARMCX3Q9UH62 379 aaPredicted RBP15.81■□□□□ 0.12
SHROOM1-208ENST00000617339 TMEM119Q4V9L6 283 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 NFRKBQ6P4R8 1299 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 MSL3Q8N5Y2 521 aaKnown RBP15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 MS4A14Q96JA4 679 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 KCNMB3Q9NPA1 279 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 GPRC5CQ9NQ84 441 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 ZC3H4Q9UPT8 1303 aaKnown RBP15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 UBR3Q6ZT12 1888 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 IPO5O00410 1097 aaKnown RBP15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 LRRN2O75325 713 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 MCM3P25205 808 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 CAP2P40123 477 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 KCNMA1Q12791 1236 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 SF3A3Q12874 501 aaKnown RBP eCLIP15.8■□□□□ 0.122e-6■■□□□ 12.5
SHROOM1-208ENST00000617339 CCDC181Q5TID7 509 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 ANGEL2Q5VTE6 544 aaKnown RBP15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 CABS1Q96KC9 395 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 SH2D4AQ9H788 454 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 WRAP73Q9P2S5 460 aaPredicted RBP15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 PCDHA13Q9Y5I0 950 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 KLHL30Q0D2K2 578 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 CCDC70Q6NSX1 233 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 LRRC55Q6ZSA7 311 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 ETNPPLQ8TBG4 499 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 KIFC3Q9BVG8 833 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 VCPKMTQ9H867 229 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 DMGDHQ9UI17 866 aaKnown RBP15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 CASZ1Q86V15 1759 aa15.8■□□□□ 0.12
SHROOM1-208ENST00000617339 SCN9AQ15858 1988 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 NOVP48745 357 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 MMP14P50281 582 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 NPEPPSP55786 919 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 GADL1Q6ZQY3 521 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 LENG9Q96B70 501 aa15.79■□□□□ 0.12
SHROOM1-208ENST00000617339 LRRC1Q9BTT6 524 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms