RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 PPP4R3CPQ6ZMV5 832 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 CCDC89Q8N998 374 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 RNF169Q8NCN4 708 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 LRRN4CLQ8ND94 238 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 FAM71BQ8TC56 605 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 PRMT6Q96LA8 375 aaPredicted RBP9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 CAPS2Q9BXY5 557 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 KCPQ6ZWJ8 1503 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 INO80B-WBP1J3KQ70 363 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 MXI1P50539 228 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 ZSCAN26Q16670 478 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 MED10Q9BTT4 135 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 MSTO1Q9BUK6 570 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 INO80BQ9C086 356 aaPredicted RBP9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 TACC3Q9Y6A5 838 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 IFNB1P01574 187 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 ERVK-24P63145 666 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 NLRP7Q8WX94 980 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 NLRP4Q96MN2 994 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 CCSER1Q9C0I3 900 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 NXF1Q9UBU9 619 aaKnown RBP9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 SUGT1Q9Y2Z0 365 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 GOLGA8SH3BPF8 625 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 IL1R1P14778 569 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 IFRD2Q12894 506 aaPredicted RBP9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 MTMR3Q13615 1198 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 KRT81Q14533 505 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 PPP2R5DQ14738 602 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 TTC31Q49AM3 519 aaPredicted RBP9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 ZNF394Q53GI3 561 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 PLA2G4FQ68DD2 849 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 ALKBH5Q6P6C2 394 aaKnown RBP9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 CATSPER3Q86XQ3 398 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 SLC7A3Q8WY07 619 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 OSBPL9Q96SU4 736 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 POLR3FQ9H1D9 316 aaPredicted RBP9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 SEPT10Q9P0V9 454 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 ATP8A1Q9Y2Q0 1164 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 SRGNP10124 158 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 PPP4CP60510 307 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 DDR1Q08345 913 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 PPFIA1Q13136 1202 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 NCAPHQ15003 741 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 GIMAP8Q8ND71 665 aaPredicted RBP9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 ACER1Q8TDN7 264 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 FERMT1Q9BQL6 677 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 RUSC1Q9BVN2 902 aa9.68□□□□□ -0.86
PDLIM5-222ENST00000615540 PHRF1Q9P1Y6 1649 aaKnown RBP9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 RSPH10B2B2RC85 870 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 RSPH10BP0C881 870 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 EZRP15311 586 aaKnown RBP9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 OSBPP22059 807 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 YWHABP31946 246 aaKnown RBP9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 MNAT1P51948 309 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 PLTPP55058 493 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 SAMD7Q7Z3H4 446 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 ZNF710Q8N1W2 664 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 PROM2Q8N271 834 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 DAGLBQ8NCG7 672 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 GIMAP7Q8NHV1 300 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 FAM20AQ96MK3 541 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 UNC45AQ9H3U1 944 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 TYW1Q9NV66 732 aaKnown RBP9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 DENND3A2RUS2 1198 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 WNT7AO00755 349 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 DAPK3O43293 454 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 MED24O75448 989 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 SLCO1A2P46721 670 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 IL17AQ16552 155 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 BSPRYQ5W0U4 402 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 PGRMC1O00264 195 aaKnown RBP9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 FOXP2O15409 715 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 LACTBP83111 547 aaPredicted RBP9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 PTK2Q05397 1052 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 DRAP1Q14919 205 aaPredicted RBP9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 NAALADL2Q58DX5 795 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 LRRC4BQ9NT99 713 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 PHLPP1O60346 1717 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 FGGP02679 453 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 CNGA1P29973 690 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 JAK3P52333 1124 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 MXRA7P84157 204 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 PDIA5Q14554 519 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 FAM47CQ5HY64 1035 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 GUF1Q8N442 669 aaKnown RBP9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 GPATCH11Q8N954 259 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 RSAD2Q8WXG1 361 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 CEP63Q96MT8 703 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 ATP6V0A4Q9HBG4 840 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 NKIRAS1Q9NYS0 192 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 ATF2P15336 505 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 PLCB1Q9NQ66 1216 aa9.67□□□□□ -0.86
PDLIM5-222ENST00000615540 RGS16O15492 202 aaPredicted RBP9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 GGCXP38435 758 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 VAMP7P51809 220 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 DPP9Q86TI2 863 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 DNAAF5Q86Y56 855 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 REXO1L1PQ8IX06 675 aa9.66□□□□□ -0.86
PDLIM5-222ENST00000615540 MAGOHBQ96A72 148 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms