RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 KRT86O43790 486 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 CARSP49589 748 aaKnown RBP11.08□□□□□ -0.64
VPS39-214ENST00000614932 SARSP49591 514 aaKnown RBP11.08□□□□□ -0.64
VPS39-214ENST00000614932 RTN1Q16799 776 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 TPTE2Q6XPS3 522 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 METTL16Q86W50 562 aaKnown RBP11.08□□□□□ -0.64
VPS39-214ENST00000614932 FOXP4Q8IVH2 680 aaPredicted RBP11.08□□□□□ -0.64
VPS39-214ENST00000614932 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.08□□□□□ -0.64
VPS39-214ENST00000614932 NME8Q8N427 588 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 ABTB1Q969K4 478 aaPredicted RBP11.08□□□□□ -0.64
VPS39-214ENST00000614932 LENG1Q96BZ8 264 aaPredicted RBP11.08□□□□□ -0.64
VPS39-214ENST00000614932 SMC6Q96SB8 1091 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 KRT23Q9C075 422 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 TAOK3Q9H2K8 898 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 GDF3Q9NR23 364 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 SAMD15Q9P1V8 674 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 HSFX1Q9UBD0 423 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 ZNF148Q9UQR1 794 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 HPSEQ9Y251 543 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 TNKSO95271 1327 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 A0A0J9YVX5 310 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 ASLP04424 464 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 HIBADHP31937 336 aaKnown RBP11.08□□□□□ -0.64
VPS39-214ENST00000614932 NEK2P51955 445 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 COPS2P61201 443 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 LMNB2Q03252 620 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 UBE4AQ14139 1066 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 ALX1Q15699 326 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 ERMARDQ5T6L9 678 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 AGBL2Q5U5Z8 902 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 ZNF662Q6ZS27 426 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 CCNJLQ8IV13 435 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 DEPTORQ8TB45 409 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 OXER1Q8TDS5 423 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 CENPTQ96BT3 561 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 CATSPER2Q96P56 530 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 XPO6Q96QU8 1125 aaKnown RBP11.08□□□□□ -0.64
VPS39-214ENST00000614932 CTAGE1Q96RT6 745 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 RIOK1Q9BRS2 568 aaKnown RBP11.08□□□□□ -0.64
VPS39-214ENST00000614932 LRRC4BQ9NT99 713 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 ABCF3Q9NUQ8 709 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 ADD3Q9UEY8 706 aaKnown RBP11.08□□□□□ -0.64
VPS39-214ENST00000614932 INTUQ9ULD6 942 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 LRCH1Q9Y2L9 728 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 SPO11Q9Y5K1 396 aa11.08□□□□□ -0.64
VPS39-214ENST00000614932 MAGEA13PA6NCF6 341 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 NDUFB5O43674 189 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 ITGA2BP08514 1039 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 KCNA3P22001 575 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 GUCY2FP51841 1108 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 GRIN1Q05586 938 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 GRIK5Q16478 980 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 PUS10Q3MIT2 529 aaKnown RBP11.07□□□□□ -0.64
VPS39-214ENST00000614932 CFAP157Q5JU67 520 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 DUS1LQ6P1R4 473 aaKnown RBP11.07□□□□□ -0.64
VPS39-214ENST00000614932 ZNF654Q8IZM8 581 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 KIF2BQ8N4N8 673 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 TRIML1Q8N9V2 468 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 STK32AQ8WU08 396 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 IQCDQ96DY2 449 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 FAM129AQ9BZQ8 928 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 CNOT10Q9H9A5 744 aaKnown RBP11.07□□□□□ -0.64
VPS39-214ENST00000614932 SNX12Q9UMY4 172 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 MYH13Q9UKX3 1938 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 FAM205CA6NFA0 338 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 TPBGLP0DKB5 382 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 PSMC1P62191 440 aaKnown RBP11.07□□□□□ -0.64
VPS39-214ENST00000614932 DIXDC1Q155Q3 683 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 MUM1Q2TAK8 710 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 GALNTL6Q49A17 601 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 ASAP3Q8TDY4 903 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 IFT81Q8WYA0 676 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 ZNF317Q96PQ6 595 aaPredicted RBP11.07□□□□□ -0.64
VPS39-214ENST00000614932 CNNM2Q9H8M5 875 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 ETNK2Q9NVF9 386 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 VPS54Q9P1Q0 977 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 ZNF180Q9UJW8 692 aa11.07□□□□□ -0.64
VPS39-214ENST00000614932 LRP5O75197 1615 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 RAD21O60216 631 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 PLEKHA8P1O95397 391 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 GNAT2P19087 354 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 HSPA9P38646 679 aaKnown RBP11.06□□□□□ -0.64
VPS39-214ENST00000614932 CCNFP41002 786 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 MAP7Q14244 749 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 PLS1Q14651 629 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 TRAPPC3LQ5T215 181 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 TRIM50Q86XT4 487 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 SCUBE1Q8IWY4 988 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 DIS3L2Q8IYB7 885 aaKnown RBP11.06□□□□□ -0.64
VPS39-214ENST00000614932 RBBP8NLQ8NC74 664 aaPredicted RBP11.06□□□□□ -0.64
VPS39-214ENST00000614932 RNF25Q96BH1 459 aaPredicted RBP11.06□□□□□ -0.64
VPS39-214ENST00000614932 NSUN4Q96CB9 384 aaKnown RBP11.06□□□□□ -0.64
VPS39-214ENST00000614932 SNX27Q96L92 541 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 NUP88Q99567 741 aaPredicted RBP11.06□□□□□ -0.64
VPS39-214ENST00000614932 TSKSQ9UJT2 592 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 USH1CQ9Y6N9 552 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 ZNF804BA4D1E1 1349 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 BAZ2BQ9UIF8 2168 aaKnown RBP11.06□□□□□ -0.64
VPS39-214ENST00000614932 AKR1B10O60218 316 aa11.06□□□□□ -0.64
VPS39-214ENST00000614932 CTNND1O60716 968 aaKnown RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms