RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 FCHO2Q0JRZ9 810 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 CAPRIN1Q14444 709 aaKnown RBP9.37□□□□□ -0.91
TTC28-208ENST00000612946 PREPLQ4J6C6 727 aaPredicted RBP9.37□□□□□ -0.91
TTC28-208ENST00000612946 TMCO4Q5TGY1 634 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 ATP11CQ8NB49 1132 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 P2RX5Q93086 422 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 LIMA1Q9UHB6 759 aaKnown RBP9.37□□□□□ -0.91
TTC28-208ENST00000612946 MYO5CQ9NQX4 1742 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 CCDC103Q8IW40 242 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 OSBPL8Q9BZF1 889 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 CCPG1Q9ULG6 757 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 GCNT3O95395 438 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 MYLK4Q86YV6 388 aaPredicted RBP9.37□□□□□ -0.91
TTC28-208ENST00000612946 PYROXD1Q8WU10 500 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 TOM1L1O75674 476 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 TBL3Q12788 808 aaKnown RBP9.37□□□□□ -0.91
TTC28-208ENST00000612946 PIK3AP1Q6ZUJ8 805 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 GSNP06396 782 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 RECQLP46063 649 aaPredicted RBP9.37□□□□□ -0.91
TTC28-208ENST00000612946 CABP7Q86V35 215 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 BHMTQ93088 406 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 LRRC39Q96DD0 335 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 TRMT112Q9UI30 125 aaKnown RBP9.37□□□□□ -0.91
TTC28-208ENST00000612946 VIL1P09327 827 aaKnown RBP9.37□□□□□ -0.91
TTC28-208ENST00000612946 SCTRP47872 440 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 PDAP1Q13442 181 aaKnown RBP9.37□□□□□ -0.91
TTC28-208ENST00000612946 CNBD1Q8NA66 436 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 KCNV2Q8TDN2 545 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 SERTAD1Q9UHV2 236 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 FAM47DPA6NHR8 397 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 ASAP2O43150 1006 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 FCGR1AP12314 374 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 NYAP1Q6ZVC0 841 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 HDDC2Q7Z4H3 204 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 RANBP17Q9H2T7 1088 aaKnown RBP9.37□□□□□ -0.91
TTC28-208ENST00000612946 NSMCE4AQ9NXX6 385 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 CEP72Q9P209 647 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 ATXN10Q9UBB4 475 aa9.37□□□□□ -0.91
TTC28-208ENST00000612946 MAP3K13O43283 966 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 NQO1P15559 274 aaKnown RBP9.36□□□□□ -0.91
TTC28-208ENST00000612946 RCAN1P53805 252 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 TRPC4APQ8TEL6 797 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 SAP30BPQ9UHR5 308 aaKnown RBP9.36□□□□□ -0.91
TTC28-208ENST00000612946 SMIM31A0A1B0GVY4 71 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 TMEM247A6NEH6 219 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 ENC1O14682 589 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 FGGP02679 453 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 ATP5JP18859 108 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 SMARCA1P28370 1054 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 ARMCX4Q5H9R4 360 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 ZNF804AQ7Z570 1209 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 BEST2Q8NFU1 509 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 TMOD3Q9NYL9 352 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 SH3GLB1Q9Y371 365 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 PRG4Q92954 1404 aaPredicted RBP9.36□□□□□ -0.91
TTC28-208ENST00000612946 MYH3P11055 1940 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 SGK1O00141 431 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 OR52Z1P0C646 297 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 SPINK5Q9NQ38 1064 aaPredicted RBP9.36□□□□□ -0.91
TTC28-208ENST00000612946 EPS8Q12929 822 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.36□□□□□ -0.91
TTC28-208ENST00000612946 ATP8B4Q8TF62 1192 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 KLHL25Q9H0H3 589 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 MMADHCQ9H3L0 296 aaPredicted RBP9.36□□□□□ -0.91
TTC28-208ENST00000612946 CYP26B1Q9NR63 512 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 TCP11X1B4DZS4 312 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 PSMD14O00487 310 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 NCF2P19878 526 aaPredicted RBP9.36□□□□□ -0.91
TTC28-208ENST00000612946 OMA1Q96E52 524 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 KLHL31Q9H511 634 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 TRPM2O94759 1503 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 HSPA4LO95757 839 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 ALOX5P09917 674 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 MTTPP55157 894 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 RPS6KC1Q96S38 1066 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 KDM5BQ9UGL1 1544 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 PNMA8CA0A1B0GUJ8 204 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 LETM2Q2VYF4 491 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 RABGAP1LQ5R372 815 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 EME1Q96AY2 570 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 VPS50Q96JG6 964 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 IGF2BP3O00425 579 aaKnown RBP eCLIP9.36□□□□□ -0.91
TTC28-208ENST00000612946 AARSP49588 968 aaKnown RBP eCLIP9.36□□□□□ -0.91
TTC28-208ENST00000612946 ARPC4P59998 168 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 RESP18Q5W5W9 173 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 TOGARAM2Q6ZUX3 1019 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 XPO6Q96QU8 1125 aaKnown RBP9.36□□□□□ -0.91
TTC28-208ENST00000612946 ACSL3O95573 720 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 KRT14P02533 472 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 AFPP02771 609 aaKnown RBP9.36□□□□□ -0.91
TTC28-208ENST00000612946 EIF2B2P49770 351 aaKnown RBP9.36□□□□□ -0.91
TTC28-208ENST00000612946 RASGRP2Q7LDG7 609 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 LONP2Q86WA8 852 aa9.36□□□□□ -0.91
TTC28-208ENST00000612946 EML4Q9HC35 981 aaKnown RBP9.36□□□□□ -0.91
TTC28-208ENST00000612946 FKBP6O75344 327 aa9.35□□□□□ -0.91
TTC28-208ENST00000612946 H2AFYO75367 372 aaKnown RBP9.35□□□□□ -0.91
TTC28-208ENST00000612946 CLPTM1O96005 669 aa9.35□□□□□ -0.91
TTC28-208ENST00000612946 SCP2P22307 547 aa9.35□□□□□ -0.91
TTC28-208ENST00000612946 EFTUD2Q15029 972 aaKnown RBP eCLIP9.35□□□□□ -0.91
TTC28-208ENST00000612946 CHAMP1Q96JM3 812 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms