RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 CDY2AQ9Y6F7 541 aa21.72■■□□□ 1.07
UPF1-212ENST00000601689 SQORQ9Y6N5 450 aa21.72■■□□□ 1.07
UPF1-212ENST00000601689 DDX11L8A8MPP1 907 aa21.71■■□□□ 1.07
UPF1-212ENST00000601689 K7ELQ4 463 aaPredicted RBP21.71■■□□□ 1.07
UPF1-212ENST00000601689 CDC42EP1Q00587 391 aa21.71■■□□□ 1.07
UPF1-212ENST00000601689 CUL4AQ13619 759 aa21.71■■□□□ 1.07
UPF1-212ENST00000601689 ZNF174Q15697 407 aa21.71■■□□□ 1.07
UPF1-212ENST00000601689 PLEKHG4Q58EX7 1191 aa21.71■■□□□ 1.07
UPF1-212ENST00000601689 RILPL1Q5EBL4 403 aa21.71■■□□□ 1.07
UPF1-212ENST00000601689 BANK1Q8NDB2 785 aa21.71■■□□□ 1.07
UPF1-212ENST00000601689 DBF4BQ8NFT6 615 aa21.71■■□□□ 1.07
UPF1-212ENST00000601689 ERMNQ8TAM6 284 aa21.71■■□□□ 1.07
UPF1-212ENST00000601689 INTS4Q96HW7 963 aaKnown RBP21.71■■□□□ 1.07
UPF1-212ENST00000601689 CCDC43Q96MW1 224 aaKnown RBP21.71■■□□□ 1.07
UPF1-212ENST00000601689 IFIH1Q9BYX4 1025 aaKnown RBP21.71■■□□□ 1.07
UPF1-212ENST00000601689 ZSWIM4Q9H7M6 989 aa21.71■■□□□ 1.07
UPF1-212ENST00000601689 CXXC1Q9P0U4 656 aaPredicted RBP21.71■■□□□ 1.07
UPF1-212ENST00000601689 PPME1Q9Y570 386 aa21.71■■□□□ 1.07
UPF1-212ENST00000601689 AMHP03971 560 aa21.7■■□□□ 1.06
UPF1-212ENST00000601689 HSP90AA1P07900 732 aaKnown RBP21.7■■□□□ 1.06
UPF1-212ENST00000601689 OR52Z1P0C646 297 aa21.7■■□□□ 1.06
UPF1-212ENST00000601689 MTERF2Q49AM1 385 aa21.7■■□□□ 1.06
UPF1-212ENST00000601689 EFCAB12Q6NXP0 572 aa21.7■■□□□ 1.06
UPF1-212ENST00000601689 TRAF7Q6Q0C0 670 aa21.7■■□□□ 1.06
UPF1-212ENST00000601689 DEFB123Q8N688 67 aa21.7■■□□□ 1.06
UPF1-212ENST00000601689 ZBED2Q9BTP6 218 aa21.7■■□□□ 1.06
UPF1-212ENST00000601689 NIFKQ9BYG3 293 aaKnown RBP21.7■■□□□ 1.06
UPF1-212ENST00000601689 CELF4Q9BZC1 486 aaKnown RBP21.7■■□□□ 1.06
UPF1-212ENST00000601689 AKT3Q9Y243 479 aa21.7■■□□□ 1.06
UPF1-212ENST00000601689 STK24Q9Y6E0 443 aa21.7■■□□□ 1.06
UPF1-212ENST00000601689 EML1O00423 815 aa21.69■■□□□ 1.06
UPF1-212ENST00000601689 LAD1O00515 517 aa21.69■■□□□ 1.06
UPF1-212ENST00000601689 ZNF862O60290 1169 aa21.69■■□□□ 1.06
UPF1-212ENST00000601689 CHRNA1P02708 482 aa21.69■■□□□ 1.06
UPF1-212ENST00000601689 DNAJB2P25686 324 aa21.69■■□□□ 1.06
UPF1-212ENST00000601689 UGCGQ16739 394 aa21.69■■□□□ 1.06
UPF1-212ENST00000601689 C4orf19Q8IY42 314 aa21.69■■□□□ 1.06
UPF1-212ENST00000601689 TIFAQ96CG3 184 aa21.69■■□□□ 1.06
UPF1-212ENST00000601689 MTMR9Q96QG7 549 aa21.69■■□□□ 1.06
UPF1-212ENST00000601689 SUGCTQ9HAC7 445 aa21.69■■□□□ 1.06
UPF1-212ENST00000601689 GINS2Q9Y248 185 aa21.69■■□□□ 1.06
UPF1-212ENST00000601689 LAMA3Q16787 3333 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 C22orf31O95567 290 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 GHRP10912 638 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 MGAT3Q09327 533 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 TMEM62Q0P6H9 643 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 MBTPS1Q14703 1052 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 GPNMBQ14956 572 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 TSHZ1Q6ZSZ6 1077 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 TPH2Q8IWU9 490 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 SLC7A3Q8WY07 619 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 SNX21Q969T3 373 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 LXNQ9BS40 222 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 FTHL17Q9BXU8 183 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 SLC28A3Q9HAS3 691 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 PCDHA11Q9Y5I1 949 aa21.68■■□□□ 1.06
UPF1-212ENST00000601689 KDM3AQ9Y4C1 1321 aa21.67■■□□□ 1.06
UPF1-212ENST00000601689 WDR5P61964 334 aaKnown RBP21.67■■□□□ 1.06
UPF1-212ENST00000601689 FBXO47Q5MNV8 452 aa21.67■■□□□ 1.06
UPF1-212ENST00000601689 HAUS3Q68CZ6 603 aa21.67■■□□□ 1.06
UPF1-212ENST00000601689 KIAA0319LQ8IZA0 1049 aa21.67■■□□□ 1.06
UPF1-212ENST00000601689 DYDC2Q96IM9 177 aa21.67■■□□□ 1.06
UPF1-212ENST00000601689 CEP170P1Q96L14 293 aa21.67■■□□□ 1.06
UPF1-212ENST00000601689 SCLT1Q96NL6 688 aa21.67■■□□□ 1.06
UPF1-212ENST00000601689 EIF2AK1Q9BQI3 630 aaKnown RBP21.67■■□□□ 1.06
UPF1-212ENST00000601689 PBX4Q9BYU1 374 aa21.67■■□□□ 1.06
UPF1-212ENST00000601689 RNF216Q9NWF9 866 aaPredicted RBP21.67■■□□□ 1.06
UPF1-212ENST00000601689 LOXHD1Q8IVV2 1947 aa21.67■■□□□ 1.06
UPF1-212ENST00000601689 ZBTB42B2RXF5 422 aa21.66■■□□□ 1.06
UPF1-212ENST00000601689 YWHABP31946 246 aaKnown RBP21.66■■□□□ 1.06
UPF1-212ENST00000601689 TECP42680 631 aa21.66■■□□□ 1.06
UPF1-212ENST00000601689 CYP4A11Q02928 519 aa21.66■■□□□ 1.06
UPF1-212ENST00000601689 PAK2Q13177 524 aa21.66■■□□□ 1.06
UPF1-212ENST00000601689 VWCEQ96DN2 955 aa21.66■■□□□ 1.06
UPF1-212ENST00000601689 ZBTB10Q96DT7 871 aa21.66■■□□□ 1.06
UPF1-212ENST00000601689 MICAL3Q7RTP6 2002 aa21.66■■□□□ 1.06
UPF1-212ENST00000601689 VPS37CA5D8V6 355 aaPredicted RBP21.65■■□□□ 1.06
UPF1-212ENST00000601689 GRXCR1A8MXD5 290 aa21.65■■□□□ 1.06
UPF1-212ENST00000601689 GPR182O15218 404 aa21.65■■□□□ 1.06
UPF1-212ENST00000601689 TLL1O43897 1013 aa21.65■■□□□ 1.06
UPF1-212ENST00000601689 GAS2O43903 313 aaKnown RBP21.65■■□□□ 1.06
UPF1-212ENST00000601689 PDIA4P13667 645 aaKnown RBP21.65■■□□□ 1.06
UPF1-212ENST00000601689 RFC5P40937 340 aa21.65■■□□□ 1.06
UPF1-212ENST00000601689 CRYBB1P53674 252 aaPredicted RBP21.65■■□□□ 1.06
UPF1-212ENST00000601689 POLGP54098 1239 aaPredicted RBP21.65■■□□□ 1.06
UPF1-212ENST00000601689 SPIRE1Q08AE8 756 aa21.65■■□□□ 1.06
UPF1-212ENST00000601689 CTTNQ14247 550 aaKnown RBP21.65■■□□□ 1.06
UPF1-212ENST00000601689 BRAPQ7Z569 592 aa21.65■■□□□ 1.06
UPF1-212ENST00000601689 HERC6Q8IVU3 1022 aa21.65■■□□□ 1.06
UPF1-212ENST00000601689 MYOCDQ8IZQ8 938 aa21.65■■□□□ 1.06
UPF1-212ENST00000601689 TMEM60Q9H2L4 133 aa21.65■■□□□ 1.06
UPF1-212ENST00000601689 CYP26B1Q9NR63 512 aa21.65■■□□□ 1.06
UPF1-212ENST00000601689 RGL1Q9NZL6 768 aa21.65■■□□□ 1.06
UPF1-212ENST00000601689 RPS6KA5O75582 802 aa21.64■■□□□ 1.05
UPF1-212ENST00000601689 CLCN3P51790 818 aa21.64■■□□□ 1.05
UPF1-212ENST00000601689 NFX1Q12986 1120 aaKnown RBP21.64■■□□□ 1.05
UPF1-212ENST00000601689 PTGDRQ13258 359 aa21.64■■□□□ 1.05
UPF1-212ENST00000601689 LPIN1Q14693 890 aa21.64■■□□□ 1.05
UPF1-212ENST00000601689 TARBP2Q15633 366 aaKnown RBP21.64■■□□□ 1.05
UPF1-212ENST00000601689 XKR9Q5GH70 373 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms