RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	SLC12A3	P55017	1021 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	FCGRT	P55899	365 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	LY6K	Q17RY6	165 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	MIS18BP1	Q6P0N0	1132 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	CCDC62	Q6P9F0	684 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	METTL7B	Q6UX53	244 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	PPFIBP1	Q86W92	1011 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	C4orf19	Q8IY42	314 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	TRMT44	Q8IYL2	757 aa	Known RBP	12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	NPLOC4	Q8TAT6	608 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	PIGO	Q8TEQ8	1089 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	USP6NL	Q92738	828 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	DDX12P	Q92771	950 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	CFHR5	Q9BXR6	569 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	BHMT2	Q9H2M3	363 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	MLXIP	Q9HAP2	919 aa		12.94	□□□□□ -0.34
VRK3-223	ENST00000601341	PLXNB2	O15031	1838 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	PVALEF	A0A1B0GWK0	134 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	FARP2	O94887	1054 aa	Predicted RBP	12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	GGPS1	O95749	300 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	SNAI1	O95863	264 aa	Predicted RBP	12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	CCDC175	P0C221	793 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	TXN	P10599	105 aa	Known RBP	12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	CD44	P16070	742 aa	Known RBP	12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	H2AFX	P16104	143 aa	Predicted RBP	12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	FAM193A	P78312	1265 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	LACTB	P83111	547 aa	Predicted RBP	12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	SP4	Q02446	784 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	PAK1	Q13153	545 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	UTP14C	Q5TAP6	766 aa	Known RBP	12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	ABHD15	Q6UXT9	468 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	GPBP1	Q86WP2	473 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	ATP6V0A1	Q93050	837 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	ABHD16B	Q9H3Z7	469 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	WRAP73	Q9P2S5	460 aa	Predicted RBP	12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	GJD2	Q9UKL4	321 aa		12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	ZNFX1	Q9P2E3	1918 aa	Known RBP	12.93	□□□□□ -0.34
VRK3-223	ENST00000601341	RBM47	A0AV96	593 aa	Known RBP	12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	KLRC4	O43908	158 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	RHOBTB3	O94955	611 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	ATG7	O95352	703 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	ARIH2	O95376	493 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	KRT18	P05783	430 aa	Known RBP	12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	SUPT20HL2	P0C7V6	817 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	CYP11B2	P19099	503 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	PSMC4	P43686	418 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	KMT5B	Q4FZB7	885 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	CELF3	Q5SZQ8	465 aa	Known RBP	12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	TAPT1	Q6NXT6	567 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	UNC13D	Q70J99	1090 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	DYM	Q7RTS9	669 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	DHX37	Q8IY37	1157 aa	Known RBP	12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	NOC3L	Q8WTT2	800 aa	Known RBP	12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	APBA2	Q99767	749 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	PDGFC	Q9NRA1	345 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	EXOC1	Q9NV70	894 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	FAM53C	Q9NYF3	392 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	GABBR1	Q9UBS5	961 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	DBR1	Q9UK59	544 aa	Known RBP	12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	ZNF236	Q9UL36	1845 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	ZBTB39	O15060	712 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	SORBS3	O60504	671 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	MFAP3L	O75121	409 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	TRPA1	O75762	1119 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	TBC1D8	O95759	1140 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	CYP2B6	P20813	491 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	SP3	Q02447	781 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	IRF5	Q13568	498 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	ACVR2B	Q13705	512 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	KIF22	Q14807	665 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	OLFML2B	Q68BL8	750 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	SWSAP1	Q6NVH7	229 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	DNAJC19	Q96DA6	116 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	KATNBL1	Q9H079	304 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	KCND2	Q9NZV8	630 aa		12.92	□□□□□ -0.34
VRK3-223	ENST00000601341	ARHGEF35	A5YM69	484 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	BACH1	O14867	736 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	ATP8B1	O43520	1251 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	IDE	P14735	1019 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	YWHAB	P31946	246 aa	Known RBP	12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	STIM1	Q13586	685 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	UGCG	Q16739	394 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	COBLL1	Q53SF7	1204 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	ARSH	Q5FYA8	562 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	OTUD6A	Q7L8S5	288 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	TMTC1	Q8IUR5	882 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	CCDC65	Q8IXS2	484 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	SEPT1	Q8WYJ6	367 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	TRIM47	Q96LD4	638 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	ARGLU1	Q9NWB6	273 aa	Predicted RBP	12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	RNF186	Q9NXI6	227 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	MYO1A	Q9UBC5	1043 aa		12.91	□□□□□ -0.34
VRK3-223	ENST00000601341	LRRC37A2	A6NM11	1700 aa		12.9	□□□□□ -0.34
VRK3-223	ENST00000601341		A0A1W2PQC6	194 aa		12.9	□□□□□ -0.34
VRK3-223	ENST00000601341	NOP56	O00567	594 aa	Known RBP	12.9	□□□□□ -0.34
VRK3-223	ENST00000601341	XRCC5	P13010	732 aa	Known RBP	12.9	□□□□□ -0.34
VRK3-223	ENST00000601341	EEF1G	P26641	437 aa	Known RBP	12.9	□□□□□ -0.34
VRK3-223	ENST00000601341	CTGF	P29279	349 aa		12.9	□□□□□ -0.34
VRK3-223	ENST00000601341	CASQ1	P31415	396 aa		12.9	□□□□□ -0.34
VRK3-223	ENST00000601341	ADK	P55263	362 aa	Known RBP	12.9	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms