RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 MMP1P03956 469 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 ARP10275 920 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 AVPR2P30518 371 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 NRIP1P48552 1158 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 PUM1Q14671 1186 aaKnown RBP eCLIP9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 PLCB4Q15147 1175 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 TYW1BQ6NUM6 668 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 TAF2Q6P1X5 1199 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 TRMT1LQ7Z2T5 733 aaKnown RBP9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 MICU3Q86XE3 530 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 SPPL3Q8TCT6 385 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 POF1BQ8WVV4 589 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 GPRASP2Q96D09 838 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 TCEANC2Q96MN5 208 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 TMX1Q9H3N1 280 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 ERAP1Q9NZ08 941 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 CLEC1BQ9P126 229 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 CD207Q9UJ71 328 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 CDH22Q9UJ99 828 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 KMT2EQ8IZD2 1858 aa9.91□□□□□ -0.82
SHKBP1-220ENST00000599716 CCDC69A6NI79 296 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 ADAMTS3O15072 1205 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 DDAH1O94760 285 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 RB1P06400 928 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 SP100P23497 879 aaPredicted RBP9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 NFX1Q12986 1120 aaKnown RBP9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 TRAF1Q13077 416 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 ITGB3BPQ13352 177 aaPredicted RBP9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 ADAM15Q13444 863 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 SMAD4Q13485 552 aaKnown RBP9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 CASC1Q6TDU7 716 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 RSPH3Q86UC2 560 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 CRIPAKQ8N1N5 446 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 VN1R2Q8NFZ6 395 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 TMEM40Q8WWA1 233 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 RUFY2Q8WXA3 655 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 MAP4K1Q92918 833 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 MSLNLQ96KJ4 702 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 APOL5Q9BWW9 433 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 SMARCAD1Q9H4L7 1026 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 JPH1Q9HDC5 661 aaPredicted RBP9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 JADE2Q9NQC1 790 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 KCNH7Q9NS40 1196 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 TMEM260Q9NX78 707 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 TRPV2Q9Y5S1 764 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 EVPLQ92817 2033 aa9.9□□□□□ -0.82
SHKBP1-220ENST00000599716 SPDYE3A6NKU9 549 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 SLC27A2O14975 620 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 GALR2O43603 387 aaPredicted RBP9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 KIF5BP33176 963 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 ACTR2P61160 394 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 APOBRQ0VD83 1088 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 PAK2Q13177 524 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 SPOUT1Q5T280 376 aaKnown RBP9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 FAM102BQ5T8I3 360 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 WWC2Q6AWC2 1192 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 XRRA1Q6P2D8 792 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 TMTC3Q6ZXV5 915 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 NPAS4Q8IUM7 802 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 ZNF668Q96K58 619 aaPredicted RBP9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 RPGRIP1Q96KN7 1286 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 LSG1Q9H089 658 aaKnown RBP9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 LMAN2LQ9H0V9 348 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 SLC9A2Q9UBY0 812 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 NOC2LQ9Y3T9 749 aaKnown RBP9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 FRYQ5TBA9 3013 aa9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 FNDC1Q4ZHG4 1894 aaPredicted RBP9.89□□□□□ -0.83
SHKBP1-220ENST00000599716 IGSF9BQ9UPX0 1349 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 CCNE2O96020 404 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 FGFR1P11362 822 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 SCG2P13521 617 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 PBX3P40426 434 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 ERVFC1P60507 584 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 ZXDAP98168 799 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 AAMPQ13685 434 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 MTHFD1LQ6UB35 978 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 CMTR2Q8IYT2 770 aaKnown RBP9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 GIMAP8Q8ND71 665 aaPredicted RBP9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 MICAL1Q8TDZ2 1067 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 MXRA8Q9BRK3 442 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 CELF4Q9BZC1 486 aaKnown RBP9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 AZI2Q9H6S1 392 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 RWDD3Q9Y3V2 267 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 USP15Q9Y4E8 981 aaPredicted RBP9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 SLC12A7Q9Y666 1083 aa9.88□□□□□ -0.83
SHKBP1-220ENST00000599716 CNTNAP5Q8WYK1 1306 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 RRN3P2A6NIE6 340 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 TBKBP1A7MCY6 615 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 KLRC1P26715 233 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 MCM5P33992 734 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 STAT5BP51692 787 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 NAPAP54920 295 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 KRT76Q01546 638 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 SIGLEC14Q08ET2 396 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 KIZQ2M2Z5 673 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 IER5Q5VY09 327 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 CREB3L3Q68CJ9 461 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 LLGL2Q6P1M3 1020 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 FRMD5Q7Z6J6 570 aa9.87□□□□□ -0.83
SHKBP1-220ENST00000599716 CCDC60Q8IWA6 550 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms