RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 KIAA1671Q9BY89 1806 aa13.74□□□□□ -0.21
LIG1-217ENST00000599165 EML1O00423 815 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 CHMP2AO43633 222 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 GAS7O60861 476 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 LINC00271P0C7V0 271 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 POU3F3P20264 500 aaPredicted RBP13.73□□□□□ -0.21
LIG1-217ENST00000599165 CD52P31358 61 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 LETM2Q2VYF4 491 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 ZNF484Q5JVG2 852 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 TSHZ1Q6ZSZ6 1077 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 PIK3AP1Q6ZUJ8 805 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 HAS1Q92839 578 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 APBB2Q92870 758 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 RAD9AQ99638 391 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 TEKT3Q9BXF9 490 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 CELF4Q9BZC1 486 aaKnown RBP13.73□□□□□ -0.21
LIG1-217ENST00000599165 TMX1Q9H3N1 280 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 RC3H2Q9HBD1 1191 aaKnown RBP13.73□□□□□ -0.21
LIG1-217ENST00000599165 DDX25Q9UHL0 483 aaKnown RBP13.73□□□□□ -0.21
LIG1-217ENST00000599165 TRPV2Q9Y5S1 764 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 RALGAPA2Q2PPJ7 1873 aa13.73□□□□□ -0.21
LIG1-217ENST00000599165 ARID2Q68CP9 1835 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 TMEM150BA6NC51 233 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 KIF28PB7ZC32 967 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 ENPP3O14638 875 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 AMHP03971 560 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 OATP04181 439 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 RBM25P49756 843 aaKnown RBP13.72□□□□□ -0.21
LIG1-217ENST00000599165 PRKCEQ02156 737 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 GRB10Q13322 594 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 TARBP2Q15633 366 aaKnown RBP13.72□□□□□ -0.21
LIG1-217ENST00000599165 PPP4R3AQ6IN85 833 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 TRMT1LQ7Z2T5 733 aaKnown RBP13.72□□□□□ -0.21
LIG1-217ENST00000599165 NEK8Q86SG6 692 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 RSPH3Q86UC2 560 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 ARNTL2Q8WYA1 636 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 GAS2L1Q99501 681 aaPredicted RBP13.72□□□□□ -0.21
LIG1-217ENST00000599165 MTCH2Q9Y6C9 303 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 SQORQ9Y6N5 450 aa13.72□□□□□ -0.21
LIG1-217ENST00000599165 CCDC194A0A1B0GVG4 234 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 BTBD18B2RXH4 712 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 EIF5BO60841 1220 aaKnown RBP13.71□□□□□ -0.21
LIG1-217ENST00000599165 GPR32O75388 356 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 MMP1P03956 469 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 SFNP31947 248 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 JAK3P52333 1124 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 FOSBP53539 338 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 ERVK-21P61565 698 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 SPIRE1Q08AE8 756 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 IER5Q5VY09 327 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 POTEDQ86YR6 584 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 CCDC83Q8IWF9 413 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 TNPO1Q92973 898 aaKnown RBP13.71□□□□□ -0.21
LIG1-217ENST00000599165 C17orf80Q9BSJ5 609 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 ZBED2Q9BTP6 218 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 SUGCTQ9HAC7 445 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 WRAP73Q9P2S5 460 aaPredicted RBP13.71□□□□□ -0.21
LIG1-217ENST00000599165 PADI3Q9ULW8 664 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 LIMCH1Q9UPQ0 1083 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 SAMM50Q9Y512 469 aa13.71□□□□□ -0.21
LIG1-217ENST00000599165 FNDC1Q4ZHG4 1894 aaPredicted RBP13.7□□□□□ -0.22
LIG1-217ENST00000599165 MGEA5O60502 916 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 UPP2O95045 317 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 VTNP04004 478 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 RPLP2P05387 115 aaKnown RBP13.7□□□□□ -0.22
LIG1-217ENST00000599165 IGFBP4P22692 258 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 KRT2P35908 639 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 CLCN3P51790 818 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 PPP2R5CQ13362 524 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 DRP2Q13474 957 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 TMEM266Q2M3C6 531 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 MIER3Q7Z3K6 550 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 CKAP2LQ8IYA6 745 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 NME8Q8N427 588 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 RDM1Q8NG50 284 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 GDPD5Q8WTR4 605 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 WASF1Q92558 559 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 PPP1R16BQ96T49 567 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 ERVK-5Q9HDB9 667 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 NOC2LQ9Y3T9 749 aaKnown RBP13.7□□□□□ -0.22
LIG1-217ENST00000599165 INSL6Q9Y581 213 aa13.7□□□□□ -0.22
LIG1-217ENST00000599165 CCNT1O60563 726 aaKnown RBP13.69□□□□□ -0.22
LIG1-217ENST00000599165 CD2BP2O95400 341 aaKnown RBP13.69□□□□□ -0.22
LIG1-217ENST00000599165 GCFC2P16383 781 aaKnown RBP13.69□□□□□ -0.22
LIG1-217ENST00000599165 XBP1P17861 261 aa13.69□□□□□ -0.22
LIG1-217ENST00000599165 CCDC85BQ15834 202 aaPredicted RBP13.69□□□□□ -0.22
LIG1-217ENST00000599165 KIZQ2M2Z5 673 aa13.69□□□□□ -0.22
LIG1-217ENST00000599165 DIS3L2Q8IYB7 885 aaKnown RBP13.69□□□□□ -0.22
LIG1-217ENST00000599165 LRRC71Q8N4P6 559 aa13.69□□□□□ -0.22
LIG1-217ENST00000599165 BANK1Q8NDB2 785 aa13.69□□□□□ -0.22
LIG1-217ENST00000599165 PPM1EQ8WY54 764 aa13.69□□□□□ -0.22
LIG1-217ENST00000599165 ZNF689Q96CS4 500 aaPredicted RBP13.69□□□□□ -0.22
LIG1-217ENST00000599165 FAM167AQ96KS9 214 aa13.69□□□□□ -0.22
LIG1-217ENST00000599165 FAM20AQ96MK3 541 aa13.69□□□□□ -0.22
LIG1-217ENST00000599165 TGS1Q96RS0 853 aaKnown RBP13.69□□□□□ -0.22
LIG1-217ENST00000599165 SH2D3AQ9BRG2 576 aa13.69□□□□□ -0.22
LIG1-217ENST00000599165 NIFKQ9BYG3 293 aaKnown RBP13.69□□□□□ -0.22
LIG1-217ENST00000599165 TSPYL2Q9H2G4 693 aaPredicted RBP13.69□□□□□ -0.22
LIG1-217ENST00000599165 ADAMTS10Q9H324 1103 aa13.69□□□□□ -0.22
LIG1-217ENST00000599165 MTUS1Q9ULD2 1270 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms