RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SEMA3FQ13275 785 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 PWP2Q15269 919 aaKnown RBP10.64□□□□□ -0.71
TRIM28-208ENST00000597172 CALCRLQ16602 461 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 ARL6IP4Q66PJ3 421 aaKnown RBP10.64□□□□□ -0.71
TRIM28-208ENST00000597172 ADALQ6DHV7 355 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 ZNF467Q7Z7K2 595 aaPredicted RBP10.64□□□□□ -0.71
TRIM28-208ENST00000597172 KRI1Q8N9T8 703 aaKnown RBP10.64□□□□□ -0.71
TRIM28-208ENST00000597172 SCLYQ96I15 445 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 POP1Q99575 1024 aaKnown RBP10.64□□□□□ -0.71
TRIM28-208ENST00000597172 SUGCTQ9HAC7 445 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 KCNH7Q9NS40 1196 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 FAM184BQ9ULE4 1060 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 TCHHQ07283 1943 aa10.64□□□□□ -0.71
TRIM28-208ENST00000597172 ASB14A6NK59 587 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 SPATA31C2B4DYI2 1134 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 TBX3O15119 743 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 DHX15O43143 795 aaKnown RBP10.63□□□□□ -0.71
TRIM28-208ENST00000597172 CUTAO60888 179 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 ATP9AO75110 1047 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 DUSP11O75319 330 aaKnown RBP10.63□□□□□ -0.71
TRIM28-208ENST00000597172 STAM2O75886 525 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 NBL1P41271 181 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 TXKP42681 527 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 ME1P48163 572 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 SP2Q02086 613 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 PDE4DQ08499 809 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 NBPF20Q3BBV1 942 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 GNASQ5JWF2 1037 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 SPECC1Q5M775 1068 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 SHC4Q6S5L8 630 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 EP400NLQ6ZTU2 488 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 ARMCX2Q7L311 632 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 DEFB128Q7Z7B8 93 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 SLC5A5Q92911 643 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 GPRASP2Q96D09 838 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 RMDN1Q96DB5 314 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 FAM20AQ96MK3 541 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 CSRNP2Q9H175 543 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 BCAS3Q9H6U6 928 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 SPC25Q9HBM1 224 aa10.63□□□□□ -0.71
TRIM28-208ENST00000597172 AGO4Q9HCK5 861 aaKnown RBP10.63□□□□□ -0.71
TRIM28-208ENST00000597172 COL4A4P53420 1690 aaPredicted RBP10.63□□□□□ -0.71
TRIM28-208ENST00000597172 VWA3AA6NCI4 1184 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 B4DLN1 442 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 MAFGO15525 162 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 PSMD10O75832 226 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 CMA1P23946 247 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 ICAM3P32942 547 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 TECP42680 631 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 FXR2P51116 673 aaKnown RBP eCLIP10.62□□□□□ -0.711e-11■■■□□ 18.9
TRIM28-208ENST00000597172 SETQ01105 290 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-208ENST00000597172 ITGB3BPQ13352 177 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-208ENST00000597172 MTMR1Q13613 665 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 PDIA5Q14554 519 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 TPRNQ4KMQ1 711 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 TAPT1Q6NXT6 567 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 B3GNT9Q6UX72 402 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 DTHD1Q6ZMT9 781 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 SEPT14Q6ZU15 432 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 USP49Q70CQ1 688 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 EEPD1Q7L9B9 569 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 NLRX1Q86UT6 975 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 MSL3Q8N5Y2 521 aaKnown RBP10.62□□□□□ -0.71
TRIM28-208ENST00000597172 IGSF22Q8N9C0 903 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 ZNF579Q8NAF0 562 aaKnown RBP10.62□□□□□ -0.71
TRIM28-208ENST00000597172 SLC43A3Q8NBI5 491 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 NKD2Q969F2 451 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-208ENST00000597172 KATNBL1Q9H079 304 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 TRPV6Q9H1D0 765 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 TTC12Q9H892 705 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-208ENST00000597172 PDGFCQ9NRA1 345 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.62□□□□□ -0.71
TRIM28-208ENST00000597172 MTUS1Q9ULD2 1270 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 PCDHA12Q9UN75 941 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 UNC79Q9P2D8 2635 aa10.62□□□□□ -0.71
TRIM28-208ENST00000597172 A0A1W2PQ27 194 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 A0A1W2PQ64 194 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 A0A1W2PQD8 194 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 RBM47A0AV96 593 aaKnown RBP10.61□□□□□ -0.71
TRIM28-208ENST00000597172 LCHNA4D1U4 455 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 PP2D1A8MPX8 630 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 GOLGA6L22H0YM25 854 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 IPO5O00410 1097 aaKnown RBP10.61□□□□□ -0.71
TRIM28-208ENST00000597172 KCNA2P16389 499 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 CDC25AP30304 524 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 NUBP1P53384 320 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 UBE2HP62256 183 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 ZXDAP98168 799 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 SPIRE1Q08AE8 756 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 ST3GAL2Q16842 350 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 TMEM63BQ5T3F8 832 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 RESP18Q5W5W9 173 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 FBXO16Q8IX29 292 aaPredicted RBP10.61□□□□□ -0.71
TRIM28-208ENST00000597172 SLFN12Q8IYM2 578 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 GPT2Q8TD30 523 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 EPSTI1Q96J88 318 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 MPHOSPH6Q99547 160 aaKnown RBP10.61□□□□□ -0.71
TRIM28-208ENST00000597172 ZNF577Q9BSK1 485 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 GOLPH3LQ9H4A5 285 aa10.61□□□□□ -0.71
TRIM28-208ENST00000597172 PKD2L1Q9P0L9 805 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms