RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CCDC121Q6ZUS5 278 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 MICALCLQ6ZW33 695 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 SLF2Q8IX21 1173 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 MYCT1Q8N699 235 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 MYCBPAPQ8TBZ2 947 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 SPDYE3A6NKU9 549 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 TRIM49P0CI25 452 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 TRIM49CP0CI26 452 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 EPB41P11171 864 aaKnown RBP16.63■□□□□ 0.25
UPF1-204ENST00000596842 GCKP35557 465 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 NFIAQ12857 509 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 SEMA3FQ13275 785 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 RBM46Q8TBY0 533 aaKnown RBP16.63■□□□□ 0.25
UPF1-204ENST00000596842 RNF14Q9UBS8 474 aa16.63■□□□□ 0.25
UPF1-204ENST00000596842 KDM3AQ9Y4C1 1321 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 CLSTN1O94985 981 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 PON1P27169 355 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 SLCO1A2P46721 670 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 ARSHQ5FYA8 562 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 CCDC25Q86WR0 208 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 CEP63Q96MT8 703 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 TMOD4Q9NZQ9 345 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 PHF20L1A8MW92 1017 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 NMT1P30419 496 aaKnown RBP16.62■□□□□ 0.25
UPF1-204ENST00000596842 GLG1Q92896 1179 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 ESYT2A0FGR8 921 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 CHRM1P11229 460 aaPredicted RBP16.62■□□□□ 0.25
UPF1-204ENST00000596842 PLTPP55058 493 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 SATB1Q01826 763 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 ACTN3Q08043 901 aaPredicted RBP16.62■□□□□ 0.25
UPF1-204ENST00000596842 NR2E1Q9Y466 385 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 PCDHGC5Q9Y5F6 944 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 PCDHAC2Q9Y5I4 1007 aa16.62■□□□□ 0.25
UPF1-204ENST00000596842 NR3C1P04150 777 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 IFI16Q16666 785 aaKnown RBP16.61■□□□□ 0.25
UPF1-204ENST00000596842 KNOP1Q1ED39 458 aaKnown RBP16.61■□□□□ 0.25
UPF1-204ENST00000596842 KDM7AQ6ZMT4 941 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 KIAA0825Q8IV33 1275 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 ZFPM1Q8IX07 1006 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 LRRC45Q96CN5 670 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 GANQ9H2C0 597 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 CD248Q9HCU0 757 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 DDX39AO00148 427 aaKnown RBP16.61■□□□□ 0.25
UPF1-204ENST00000596842 PRR5LQ6MZQ0 368 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 AADACL2Q6P093 401 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 SH2D3AQ9BRG2 576 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 KCTD10Q9H3F6 313 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 UTP11Q9Y3A2 253 aaKnown RBP16.61■□□□□ 0.25
UPF1-204ENST00000596842 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.61■□□□□ 0.25
UPF1-204ENST00000596842 FAM13AO94988 1023 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 HLA-DOAP06340 250 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 USP11P51784 963 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 GALCP54803 685 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 ARHGAP4P98171 946 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 PPP4R3AQ6IN85 833 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 EDEM3Q9BZQ6 932 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 LRRC4CQ9HCJ2 640 aa16.61■□□□□ 0.25
UPF1-204ENST00000596842 IFNAR2P48551 515 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 SKOR1P84550 965 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 COG2Q14746 738 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 ZNF746Q6NUN9 644 aaPredicted RBP16.6■□□□□ 0.25
UPF1-204ENST00000596842 IRF2BP2Q7Z5L9 587 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 ERMNQ8TAM6 284 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 ZC3H12CQ9C0D7 883 aaKnown RBP16.6■□□□□ 0.25
UPF1-204ENST00000596842 SNX24Q9Y343 169 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 HMGB1P1B2RPK0 211 aaPredicted RBP16.6■□□□□ 0.25
UPF1-204ENST00000596842 STAT1P42224 750 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 SLFN13Q68D06 897 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 NAIF1Q69YI7 327 aaPredicted RBP16.6■□□□□ 0.25
UPF1-204ENST00000596842 TPCN2Q8NHX9 752 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 AMFRQ9UKV5 643 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 SPATA31A5Q5VU36 1347 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 SPATA31A7Q8IWB4 1347 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 EP400Q96L91 3159 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 SKAP2O75563 359 aaPredicted RBP16.6■□□□□ 0.25
UPF1-204ENST00000596842 CTNNBL1Q8WYA6 563 aaPredicted RBP16.6■□□□□ 0.25
UPF1-204ENST00000596842 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.6■□□□□ 0.251e-6■□□□□ 11.3
UPF1-204ENST00000596842 RUSC1Q9BVN2 902 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 PTPN22Q9Y2R2 807 aa16.6■□□□□ 0.25
UPF1-204ENST00000596842 ROBO1Q9Y6N7 1651 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 CALUO43852 315 aaPredicted RBP16.59■□□□□ 0.25
UPF1-204ENST00000596842 CFBP00751 764 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 EEF2P13639 858 aaKnown RBP16.59■□□□□ 0.25
UPF1-204ENST00000596842 NBPF9Q3BBW0 867 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 CHADLQ6NUI6 762 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 ZNF572Q7Z3I7 529 aaPredicted RBP16.59■□□□□ 0.25
UPF1-204ENST00000596842 SYCP3Q8IZU3 236 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 ARFGAP2Q8N6H7 521 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 CCDC26Q8TAB7 109 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 TBC1D16Q8TBP0 767 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 RNF217Q8TC41 542 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 ISCUQ9H1K1 167 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 AIPL1Q9NZN9 384 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 THRAP3Q9Y2W1 955 aaKnown RBP16.59■□□□□ 0.25
UPF1-204ENST00000596842 ROBO3Q96MS0 1386 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 EVI5O60447 810 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 BUB1BO60566 1050 aaPredicted RBP16.59■□□□□ 0.25
UPF1-204ENST00000596842 ZNF844Q08AG5 666 aa16.59■□□□□ 0.25
UPF1-204ENST00000596842 ITGB3BPQ13352 177 aaPredicted RBP16.59■□□□□ 0.25
UPF1-204ENST00000596842 GIT2Q14161 759 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms