RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 RABGGTBP53611 331 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 PSMC5P62195 406 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 MRPS6P82932 125 aaKnown RBP12.53□□□□□ -0.4
VRK3-210ENST00000596121 SMAD3P84022 425 aaKnown RBP12.53□□□□□ -0.4
VRK3-210ENST00000596121 DRP2Q13474 957 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 GNL2Q13823 731 aaKnown RBP12.53□□□□□ -0.4
VRK3-210ENST00000596121 CTTNQ14247 550 aaKnown RBP12.53□□□□□ -0.4
VRK3-210ENST00000596121 IL17AQ16552 155 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 XKR3Q5GH77 459 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 FBXO47Q5MNV8 452 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 PLA2G4FQ68DD2 849 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 MCTP1Q6DN14 999 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 CNKSR3Q6P9H4 555 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.53□□□□□ -0.4
VRK3-210ENST00000596121 TNPO1Q92973 898 aaKnown RBP12.53□□□□□ -0.4
VRK3-210ENST00000596121 HSD17B14Q9BPX1 270 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 AGO3Q9H9G7 860 aaKnown RBP12.53□□□□□ -0.4
VRK3-210ENST00000596121 NRBP2Q9NSY0 501 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 YBX2Q9Y2T7 364 aaKnown RBP12.53□□□□□ -0.4
VRK3-210ENST00000596121 SLC4A7Q9Y6M7 1214 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 SIP14410 1827 aa12.53□□□□□ -0.4
VRK3-210ENST00000596121 POTEMA6NI47 508 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 ZBBXA8MT70 800 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 PARNO95453 639 aaKnown RBP12.52□□□□□ -0.41
VRK3-210ENST00000596121 P4HBP07237 508 aaKnown RBP12.52□□□□□ -0.41
VRK3-210ENST00000596121 OR52Z1P0C646 297 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 SPATA31C1P0DKV0 1188 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 GHRP10912 638 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 TECP42680 631 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 CLCN3P51790 818 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 NPEPPSP55786 919 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 WDR5P61964 334 aaKnown RBP12.52□□□□□ -0.41
VRK3-210ENST00000596121 DEFB103AP81534 67 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 CYP4A11Q02928 519 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 MTERF2Q49AM1 385 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 LRRC71Q8N4P6 559 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 TMEM40Q8WWA1 233 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 FAM167AQ96KS9 214 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 PPP1R16BQ96T49 567 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 EIF2AK1Q9BQI3 630 aaKnown RBP12.52□□□□□ -0.41
VRK3-210ENST00000596121 LXNQ9BS40 222 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 PBX4Q9BYU1 374 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 CELF4Q9BZC1 486 aaKnown RBP12.52□□□□□ -0.41
VRK3-210ENST00000596121 TTYH1Q9H313 450 aaPredicted RBP12.52□□□□□ -0.41
VRK3-210ENST00000596121 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.52□□□□□ -0.41
VRK3-210ENST00000596121 SEPT9Q9UHD8 586 aaPredicted RBP12.52□□□□□ -0.41
VRK3-210ENST00000596121 KIF3AQ9Y496 699 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 CHD9Q3L8U1 2897 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 EVPLQ92817 2033 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 CDH23Q9H251 3354 aa12.52□□□□□ -0.41
VRK3-210ENST00000596121 IGKV6-21A0A0C4DH24 114 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 H3BQV1 296 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 GPR32O75388 356 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 MED24O75448 989 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 ARHGEF15O94989 841 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 VTNP04004 478 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 ACTN1P12814 892 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 SYT1P21579 422 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 PTGDRQ13258 359 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 ORC2Q13416 577 aaPredicted RBP12.51□□□□□ -0.41
VRK3-210ENST00000596121 GPR153Q6NV75 609 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 EFCAB12Q6NXP0 572 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 RSPH3Q86UC2 560 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 RTN4RL1Q86UN2 441 aaPredicted RBP12.51□□□□□ -0.41
VRK3-210ENST00000596121 FERMT3Q86UX7 667 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 TPH2Q8IWU9 490 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 NME8Q8N427 588 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 METTL13Q8N6R0 699 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 INTS4Q96HW7 963 aaKnown RBP12.51□□□□□ -0.41
VRK3-210ENST00000596121 ZNF668Q96K58 619 aaPredicted RBP12.51□□□□□ -0.41
VRK3-210ENST00000596121 NOL7Q9UMY1 257 aaKnown RBP12.51□□□□□ -0.41
VRK3-210ENST00000596121 TRPV2Q9Y5S1 764 aa12.51□□□□□ -0.41
VRK3-210ENST00000596121 PTPRSQ13332 1948 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 ABHD14A-ACY1A0A1B0GW23 586 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.5□□□□□ -0.41
VRK3-210ENST00000596121 MAGEB2O15479 319 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 MAFO75444 373 aaPredicted RBP12.5□□□□□ -0.41
VRK3-210ENST00000596121 BAIAP3O94812 1187 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 ATP2A2P16615 1042 aaKnown RBP12.5□□□□□ -0.41
VRK3-210ENST00000596121 CD52P31358 61 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 IKBKEQ14164 716 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 KIZQ2M2Z5 673 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 IER5Q5VY09 327 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 C4orf19Q8IY42 314 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 LINC01599Q8WXQ3 324 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 FAM161BQ96MY7 647 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 ADAMTS10Q9H324 1103 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 ZSWIM4Q9H7M6 989 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 SUGCTQ9HAC7 445 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 CYP26B1Q9NR63 512 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 CEP131Q9UPN4 1083 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 KDM3AQ9Y4C1 1321 aa12.5□□□□□ -0.41
VRK3-210ENST00000596121 LYPLA2O95372 231 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 DNAJB2P25686 324 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 YWHABP31946 246 aaKnown RBP12.49□□□□□ -0.41
VRK3-210ENST00000596121 FXR2P51116 673 aaKnown RBP eCLIP12.49□□□□□ -0.41
VRK3-210ENST00000596121 TBC1D8BQ0IIM8 1120 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 RESTQ13127 1097 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 ECM1Q16610 540 aa12.49□□□□□ -0.41
VRK3-210ENST00000596121 TMEM266Q2M3C6 531 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms