RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 PPP4R3CPQ6ZMV5 832 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 NELFCDQ8IXH7 590 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 KLHL7Q8IXQ5 586 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 ZC3H3Q8IXZ2 948 aaKnown RBP11.86□□□□□ -0.51
VPS4B-206ENST00000591475 MICALL2Q8IY33 904 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 ARFGAP2Q8N6H7 521 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 PACSIN1Q9BY11 444 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 TMBIM4Q9HC24 238 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 TBC1D7Q9P0N9 293 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 FAM198AQ9UFP1 575 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 CAPN7Q9Y6W3 813 aa11.86□□□□□ -0.51
VPS4B-206ENST00000591475 ADAMTSL1Q8N6G6 1762 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 FSBPO95073 299 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 KIF4AO95239 1232 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 HLA-DOAP06340 250 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 GCFC2P16383 781 aaKnown RBP11.85□□□□□ -0.51
VPS4B-206ENST00000591475 USP11P51784 963 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 ITGB3BPQ13352 177 aaPredicted RBP11.85□□□□□ -0.51
VPS4B-206ENST00000591475 ENOX2Q16206 610 aaKnown RBP11.85□□□□□ -0.51
VPS4B-206ENST00000591475 SPDYE2Q495Y8 402 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 CEP85LQ5SZL2 805 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 FBXW10Q5XX13 1052 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 YTHDF3Q7Z739 585 aaKnown RBP11.85□□□□□ -0.51
VPS4B-206ENST00000591475 NLRP14Q86W24 1093 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 PRPF38AQ8NAV1 312 aaKnown RBP11.85□□□□□ -0.51
VPS4B-206ENST00000591475 HAS1Q92839 578 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 ZBED3Q96IU2 234 aaPredicted RBP11.85□□□□□ -0.51
VPS4B-206ENST00000591475 FGFBP2Q9BYJ0 223 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 KCTD10Q9H3F6 313 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 GGA2Q9UJY4 613 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 PCDHA12Q9UN75 941 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 PCDHA2Q9Y5H9 948 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 BZW2Q9Y6E2 419 aaKnown RBP11.85□□□□□ -0.51
VPS4B-206ENST00000591475 PLIN4Q96Q06 1357 aa11.85□□□□□ -0.51
VPS4B-206ENST00000591475 H0YHG0 523 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 CETN3O15182 167 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 SLC26A4O43511 780 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 PLA2G4BP0C869 781 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 TCP10Q12799 353 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 KCNH2Q12809 1159 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 ADAM9Q13443 819 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 UBE2SQ16763 222 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 EDRF1Q3B7T1 1238 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 HERC4Q5GLZ8 1057 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-206ENST00000591475 C9orf131Q5VYM1 1079 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 GPBP1Q86WP2 473 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 ACTRT1Q8TDG2 376 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 SCFD2Q8WU76 684 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 SCFD1Q8WVM8 642 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 CUL5Q93034 780 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 LRRC45Q96CN5 670 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 CALR3Q96L12 384 aaKnown RBP11.84□□□□□ -0.51
VPS4B-206ENST00000591475 CCT8L2Q96SF2 557 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 NAP1L4Q99733 375 aaKnown RBP11.84□□□□□ -0.51
VPS4B-206ENST00000591475 EMILIN3Q9NT22 766 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 PI4KBQ9UBF8 816 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 ZNF70Q9UC06 446 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-206ENST00000591475 SERPINB13Q9UIV8 391 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 DICER1Q9UPY3 1922 aaKnown RBP11.84□□□□□ -0.51
VPS4B-206ENST00000591475 PNMA6FA0A0J9YX94 578 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 E9PMD0 336 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 GCOM1H8Y6P7 765 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-206ENST00000591475 CEP104O60308 925 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 MYZAPP0CAP1 466 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 HSD17B3P37058 310 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 FNTAP49354 379 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 CLK2P49760 499 aaKnown RBP11.84□□□□□ -0.51
VPS4B-206ENST00000591475 MRPL12P52815 198 aaKnown RBP11.84□□□□□ -0.51
VPS4B-206ENST00000591475 ERVK-9P63128 1117 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 SETQ01105 290 aaPredicted RBP11.84□□□□□ -0.51
VPS4B-206ENST00000591475 TRADDQ15628 312 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 NBPF9Q3BBW0 867 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 LRRC47Q8N1G4 583 aaKnown RBP11.84□□□□□ -0.51
VPS4B-206ENST00000591475 MYCBPAPQ8TBZ2 947 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 KANSL2Q9H9L4 492 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 GPCPD1Q9NPB8 672 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 MTMR4Q9NYA4 1195 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 GPRC5DQ9NZD1 345 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 SWAP70Q9UH65 585 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 KIAA1024Q9UPX6 916 aa11.84□□□□□ -0.51
VPS4B-206ENST00000591475 SBF1O95248 1867 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 CLRN2A0PK11 232 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 PGRMC1O00264 195 aaKnown RBP11.83□□□□□ -0.52
VPS4B-206ENST00000591475 FAM107AO95990 144 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 KRT18P05783 430 aaKnown RBP11.83□□□□□ -0.52
VPS4B-206ENST00000591475 SNHG28P0DPA3 235 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 IRX3P78415 501 aaPredicted RBP11.83□□□□□ -0.52
VPS4B-206ENST00000591475 PTK2Q05397 1052 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 DPY19L2Q6NUT2 758 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 KCNV1Q6PIU1 500 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 RUFY4Q6ZNE9 571 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 IRF2BP2Q7Z5L9 587 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 ZFPM1Q8IX07 1006 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 FAM151AQ8WW52 585 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 SPAG5Q96R06 1193 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 JMJD4Q9H9V9 463 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 POLD4Q9HCU8 107 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 ATRNL1Q5VV63 1379 aa11.83□□□□□ -0.52
VPS4B-206ENST00000591475 COL2A1P02458 1487 aaPredicted RBP11.83□□□□□ -0.52
VPS4B-206ENST00000591475 ATP8B3O60423 1300 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms