RNA–Protein interactions for RNA: ENST00000584112.1

CCDC47-206, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2

Gene CCDC47, Length 588 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-206ENST00000584112 SPATA33Q96N06 139 aa12.79□□□□□ -0.36
CCDC47-206ENST00000584112 ERVK-5Q9HDB9 667 aa12.79□□□□□ -0.36
CCDC47-206ENST00000584112 SRRM3A6NNA2 597 aaPredicted RBP12.78□□□□□ -0.36
CCDC47-206ENST00000584112 PIK3CDO00329 1044 aa12.78□□□□□ -0.36
CCDC47-206ENST00000584112 PER2O15055 1255 aa12.78□□□□□ -0.36
CCDC47-206ENST00000584112 PLEKHA8P1O95397 391 aa12.78□□□□□ -0.36
CCDC47-206ENST00000584112 RB1P06400 928 aa12.78□□□□□ -0.36
CCDC47-206ENST00000584112 HOXD8P13378 290 aaPredicted RBP12.78□□□□□ -0.36
CCDC47-206ENST00000584112 UBA1P22314 1058 aaKnown RBP12.78□□□□□ -0.36
CCDC47-206ENST00000584112 XRRA1Q6P2D8 792 aa12.78□□□□□ -0.36
CCDC47-206ENST00000584112 UNQ6494/PRO21346Q6UXR6 183 aa12.78□□□□□ -0.36
CCDC47-206ENST00000584112 FIBCD1Q8N539 461 aa12.78□□□□□ -0.36
CCDC47-206ENST00000584112 SRBD1Q8N5C6 995 aaKnown RBP12.78□□□□□ -0.36
CCDC47-206ENST00000584112 GPR161Q8N6U8 529 aaKnown RBP12.78□□□□□ -0.36
CCDC47-206ENST00000584112 MLXIPQ9HAP2 919 aa12.78□□□□□ -0.36
CCDC47-206ENST00000584112 GTF2IRD1Q9UHL9 959 aa12.78□□□□□ -0.36
CCDC47-206ENST00000584112 HECTD1Q9ULT8 2610 aa12.78□□□□□ -0.36
CCDC47-206ENST00000584112 HAS3O00219 553 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 SLC30A4O14863 429 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 KINO60870 393 aaKnown RBP12.77□□□□□ -0.37
CCDC47-206ENST00000584112 PARNO95453 639 aaKnown RBP12.77□□□□□ -0.37
CCDC47-206ENST00000584112 ZNF286BP0CG31 522 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 NCLP19338 710 aaKnown RBP12.77□□□□□ -0.37
CCDC47-206ENST00000584112 RXRAP19793 462 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 NEDD9Q14511 834 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 KRT32Q14532 448 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 MFSD10Q14728 455 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 KIAA0753Q2KHM9 967 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 HSDL1Q3SXM5 330 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 MICU3Q86XE3 530 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 SIX5Q8N196 739 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 FANCBQ8NB91 859 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 WNT8BQ93098 351 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 TOP1MTQ969P6 601 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 INPP4AQ96PE3 977 aaPredicted RBP12.77□□□□□ -0.37
CCDC47-206ENST00000584112 NEK1Q96PY6 1258 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 ALG1Q9BT22 464 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 LRRC2Q9BYS8 371 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 S1PR5Q9H228 398 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 HDAC6Q9UBN7 1215 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 PLAGL2Q9UPG8 496 aa12.77□□□□□ -0.37
CCDC47-206ENST00000584112 NOP56O00567 594 aaKnown RBP12.76□□□□□ -0.37
CCDC47-206ENST00000584112 MEIS2O14770 477 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 FIBPO43427 364 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 MRPS9P82933 396 aaKnown RBP12.76□□□□□ -0.37
CCDC47-206ENST00000584112 SP2Q02086 613 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 RBL2Q08999 1139 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 TSGA10IPQ3SY00 556 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 SPECC1Q5M775 1068 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 ZNF618Q5T7W0 954 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 PCNX4Q63HM2 1172 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 APOA5Q6Q788 366 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 USP17L6PQ6QN14 398 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 TMTC3Q6ZXV5 915 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 DHX32Q7L7V1 743 aaKnown RBP12.76□□□□□ -0.37
CCDC47-206ENST00000584112 SKAP1Q86WV1 359 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 POTEDQ86YR6 584 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 KDF1Q8NAX2 398 aaPredicted RBP12.76□□□□□ -0.37
CCDC47-206ENST00000584112 PPP2R3CQ969Q6 453 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 CCDC136Q96JN2 1154 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 IFIH1Q9BYX4 1025 aaKnown RBP12.76□□□□□ -0.37
CCDC47-206ENST00000584112 PSTPIP2Q9H939 334 aa12.76□□□□□ -0.37
CCDC47-206ENST00000584112 RBM28Q9NW13 759 aaKnown RBP12.76□□□□□ -0.37
CCDC47-206ENST00000584112 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.76□□□□□ -0.37
CCDC47-206ENST00000584112 LAMA5O15230 3695 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 SPATA31C2B4DYI2 1134 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 STK25O00506 426 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 SORBS3O60504 671 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 HMGB1P09429 215 aaKnown RBP12.75□□□□□ -0.37
CCDC47-206ENST00000584112 PTK7Q13308 1070 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 METTL7BQ6UX53 244 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 NLRX1Q86UT6 975 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 RAB11FIP4Q86YS3 637 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 TEX2Q8IWB9 1127 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 CMTR1Q8N1G2 835 aaKnown RBP12.75□□□□□ -0.37
CCDC47-206ENST00000584112 GIMAP8Q8ND71 665 aaPredicted RBP12.75□□□□□ -0.37
CCDC47-206ENST00000584112 ATP8B4Q8TF62 1192 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 GPKOWQ92917 476 aaPredicted RBP eCLIP12.75□□□□□ -0.37
CCDC47-206ENST00000584112 ZFP91Q96JP5 570 aaPredicted RBP12.75□□□□□ -0.37
CCDC47-206ENST00000584112 SENP7Q9BQF6 1050 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 KIAA1671Q9BY89 1806 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 LIMD1Q9UGP4 676 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 NR2E1Q9Y466 385 aa12.75□□□□□ -0.37
CCDC47-206ENST00000584112 EVPLQ92817 2033 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.74□□□□□ -0.37
CCDC47-206ENST00000584112 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.74□□□□□ -0.37
CCDC47-206ENST00000584112 SPDYE3A6NKU9 549 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 H3BRB1 525 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 ZBTB43O43298 467 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 CYFIP1Q7L576 1253 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 CCDC82Q8N4S0 544 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 IL17RAQ96F46 866 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 CDHR1Q96JP9 859 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 C16orf70Q9BSU1 422 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 USP26Q9BXU7 913 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 OSBPL7Q9BZF2 842 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 TUT1Q9H6E5 874 aaKnown RBP12.74□□□□□ -0.37
CCDC47-206ENST00000584112 TLE6Q9H808 572 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 EHMT1Q9H9B1 1298 aa12.74□□□□□ -0.37
CCDC47-206ENST00000584112 RTEL1Q9NZ71 1219 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms