RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 CYP26B1Q9NR63 512 aa20.31■□□□□ 0.84
CCDC40-213ENST00000574933 DDX19AQ9NUU7 478 aaKnown RBP20.31■□□□□ 0.84
CCDC40-213ENST00000574933 SETD4Q9NVD3 440 aa20.31■□□□□ 0.84
CCDC40-213ENST00000574933 CCDC39Q9UFE4 941 aa20.31■□□□□ 0.84
CCDC40-213ENST00000574933 SEPT9Q9UHD8 586 aaPredicted RBP20.31■□□□□ 0.84
CCDC40-213ENST00000574933 PDE4DIPQ5VU43 2346 aa20.31■□□□□ 0.84
CCDC40-213ENST00000574933 ZBTB39O15060 712 aa20.3■□□□□ 0.84
CCDC40-213ENST00000574933 EYA4O95677 639 aa20.3■□□□□ 0.84
CCDC40-213ENST00000574933 RARRES1P49788 294 aa20.3■□□□□ 0.84
CCDC40-213ENST00000574933 RTP1P59025 263 aa20.3■□□□□ 0.84
CCDC40-213ENST00000574933 CHMP4BP1P59074 171 aa20.3■□□□□ 0.84
CCDC40-213ENST00000574933 KARSQ15046 597 aaKnown RBP20.3■□□□□ 0.84
CCDC40-213ENST00000574933 FAM47CQ5HY64 1035 aa20.3■□□□□ 0.84
CCDC40-213ENST00000574933 KCNK18Q7Z418 384 aa20.3■□□□□ 0.84
CCDC40-213ENST00000574933 PPP1R13LQ8WUF5 828 aa20.3■□□□□ 0.84
CCDC40-213ENST00000574933 CDK5RAP3Q96JB5 506 aa20.3■□□□□ 0.84
CCDC40-213ENST00000574933 DNM3Q9UQ16 869 aa20.3■□□□□ 0.84
CCDC40-213ENST00000574933 IGKV6-21A0A0C4DH24 114 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 TMEM150BA6NC51 233 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 MAGEB2O15479 319 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 C22orf31O95567 290 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 PLCG1P19174 1290 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 RGS19P49795 217 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 NPEPPSP55786 919 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 TRIM60Q495X7 471 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 MTHFD1LQ6UB35 978 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 SERINC5Q86VE9 423 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 EXOC8Q8IYI6 725 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 PIGOQ8TEQ8 1089 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 DHX33Q9H6R0 707 aaKnown RBP20.29■□□□□ 0.84
CCDC40-213ENST00000574933 BLOC1S4Q9NUP1 217 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 FAM13BQ9NYF5 915 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 STK17AQ9UEE5 414 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 HPSEQ9Y251 543 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 PCDHA2Q9Y5H9 948 aa20.29■□□□□ 0.84
CCDC40-213ENST00000574933 TANC1Q9C0D5 1861 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 SIP14410 1827 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 A0A087X0B3 334 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 TLR3O15455 904 aaKnown RBP20.28■□□□□ 0.84
CCDC40-213ENST00000574933 TREHO43280 583 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 B4GALT4O60513 344 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 ZNF200P98182 395 aaPredicted RBP20.28■□□□□ 0.84
CCDC40-213ENST00000574933 TLE2Q04725 743 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 PTGISQ16647 500 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 MTERF2Q49AM1 385 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 XKR9Q5GH70 373 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 PLA2G4FQ68DD2 849 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 CCDC73Q6ZRK6 1079 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 LINC01465Q8N7H1 131 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 LRRC15Q8TF66 581 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 TRAPPC12Q8WVT3 735 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 CEP170P1Q96L14 293 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 HTATIP2Q9BUP3 242 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 PDLIM7Q9NR12 457 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 TRMT13Q9NUP7 481 aaKnown RBP20.28■□□□□ 0.84
CCDC40-213ENST00000574933 TUBE1Q9UJT0 475 aa20.28■□□□□ 0.84
CCDC40-213ENST00000574933 CEP290O15078 2479 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 DCDC2CA8MYV0 355 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 E9PMD0 336 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 MAFO75444 373 aaPredicted RBP20.27■□□□□ 0.84
CCDC40-213ENST00000574933 KLRC1P26715 233 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 RFC5P40937 340 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 RBL2Q08999 1139 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 PTK7Q13308 1070 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 E2F4Q16254 413 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 NAALADL2Q58DX5 795 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 RRAGBQ5VZM2 374 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 TAF2Q6P1X5 1199 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 TRMT1LQ7Z2T5 733 aaKnown RBP20.27■□□□□ 0.84
CCDC40-213ENST00000574933 RPAINQ86UA6 219 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 GBP4Q96PP9 640 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 JPH2Q9BR39 696 aaPredicted RBP20.27■□□□□ 0.84
CCDC40-213ENST00000574933 PYM1Q9BRP8 204 aaKnown RBP20.27■□□□□ 0.84
CCDC40-213ENST00000574933 TRPV6Q9H1D0 765 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 BHMT2Q9H2M3 363 aa20.27■□□□□ 0.84
CCDC40-213ENST00000574933 A0A087WWV3 80 aa20.26■□□□□ 0.83
CCDC40-213ENST00000574933 SMIM35A0A1B0GVV1 85 aa20.26■□□□□ 0.83
CCDC40-213ENST00000574933 PQBP1O60828 265 aaKnown RBP20.26■□□□□ 0.83
CCDC40-213ENST00000574933 DGAT1O75907 488 aa20.26■□□□□ 0.83
CCDC40-213ENST00000574933 RPLP2P05387 115 aaKnown RBP20.26■□□□□ 0.83
CCDC40-213ENST00000574933 IGBP1P78318 339 aa20.26■□□□□ 0.83
CCDC40-213ENST00000574933 TBC1D8BQ0IIM8 1120 aa20.26■□□□□ 0.83
CCDC40-213ENST00000574933 FAAP100Q0VG06 881 aa20.26■□□□□ 0.83
CCDC40-213ENST00000574933 ZRSR1Q15695 479 aaKnown RBP20.26■□□□□ 0.83
CCDC40-213ENST00000574933 SYT2Q8N9I0 419 aaPredicted RBP20.26■□□□□ 0.83
CCDC40-213ENST00000574933 RASSF8Q8NHQ8 419 aa20.26■□□□□ 0.83
CCDC40-213ENST00000574933 MRPS27Q92552 414 aaKnown RBP20.26■□□□□ 0.83
CCDC40-213ENST00000574933 RAD54LQ92698 747 aa20.26■□□□□ 0.83
CCDC40-213ENST00000574933 PLIN2Q99541 437 aa20.26■□□□□ 0.83
CCDC40-213ENST00000574933 KCNH3Q9ULD8 1083 aa20.26■□□□□ 0.83
CCDC40-213ENST00000574933 ATP11BQ9Y2G3 1177 aa20.26■□□□□ 0.83
CCDC40-213ENST00000574933 MKI67P46013 3256 aaKnown RBP20.25■□□□□ 0.83
CCDC40-213ENST00000574933 ARHGEF35A5YM69 484 aa20.25■□□□□ 0.83
CCDC40-213ENST00000574933 GAS2O43903 313 aaKnown RBP20.25■□□□□ 0.83
CCDC40-213ENST00000574933 PFKFB1P16118 471 aa20.25■□□□□ 0.83
CCDC40-213ENST00000574933 SLC12A3P55017 1021 aa20.25■□□□□ 0.83
CCDC40-213ENST00000574933 TRIM71Q2Q1W2 868 aaKnown RBP20.25■□□□□ 0.83
CCDC40-213ENST00000574933 LARP4BQ92615 738 aaKnown RBP20.25■□□□□ 0.83
CCDC40-213ENST00000574933 SH2D3AQ9BRG2 576 aa20.25■□□□□ 0.83
CCDC40-213ENST00000574933 CUEDC2Q9H467 287 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms