RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 ATP2C1P98194 919 aaPredicted RBP12.36□□□□□ -0.43
CHD3-216ENST00000573936 HIC1Q14526 733 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 ARL6IP4Q66PJ3 421 aaKnown RBP12.36□□□□□ -0.43
CHD3-216ENST00000573936 MTHFD1LQ6UB35 978 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 OTUD6AQ7L8S5 288 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 RPAINQ86UA6 219 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 C4orf19Q8IY42 314 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 EXOC8Q8IYI6 725 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 NME8Q8N427 588 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 BANK1Q8NDB2 785 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 DHX38Q92620 1227 aaKnown RBP12.36□□□□□ -0.43
CHD3-216ENST00000573936 TIFAQ96CG3 184 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 DYDC2Q96IM9 177 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 CTAGE1Q96RT6 745 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 NIFKQ9BYG3 293 aaKnown RBP12.36□□□□□ -0.43
CHD3-216ENST00000573936 PCDHA2Q9Y5H9 948 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 REV3LO60673 3130 aa12.36□□□□□ -0.43
CHD3-216ENST00000573936 SMIM35A0A1B0GVV1 85 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 DDX11L8A8MPP1 907 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 SLITRK3O94933 977 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 LYPLA2O95372 231 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 PFKMP08237 780 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 IQCF3P0C7M6 154 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 ZSCAN22P10073 491 aaPredicted RBP12.35□□□□□ -0.43
CHD3-216ENST00000573936 CKBP12277 381 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 SELPP16109 830 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 MUTP22033 750 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 KLRC1P26715 233 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 TMOD1P28289 359 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 THPOP40225 353 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 CCL23P55773 120 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 UGCGQ16739 394 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 TRIM71Q2Q1W2 868 aaKnown RBP12.35□□□□□ -0.43
CHD3-216ENST00000573936 MARCH8Q5T0T0 291 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 HAUS3Q68CZ6 603 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 TRMT1LQ7Z2T5 733 aaKnown RBP12.35□□□□□ -0.43
CHD3-216ENST00000573936 HSD17B14Q9BPX1 270 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 JPH2Q9BR39 696 aaPredicted RBP12.35□□□□□ -0.43
CHD3-216ENST00000573936 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.35□□□□□ -0.431e-6■□□□□ 9.2
CHD3-216ENST00000573936 POLR3CQ9BUI4 534 aaPredicted RBP12.35□□□□□ -0.43
CHD3-216ENST00000573936 TUFT1Q9NNX1 390 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 LRWD1Q9UFC0 647 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 SEPT9Q9UHD8 586 aaPredicted RBP12.35□□□□□ -0.43
CHD3-216ENST00000573936 TRANK1O15050 2925 aa12.35□□□□□ -0.43
CHD3-216ENST00000573936 XIRP2A4UGR9 3374 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 POTEMA6NI47 508 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 RSPH10B2B2RC85 870 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 RSPH10BP0C881 870 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 XRCC6P12956 609 aaKnown RBP eCLIP12.34□□□□□ -0.43
CHD3-216ENST00000573936 SF3A1Q15459 793 aaKnown RBP12.34□□□□□ -0.43
CHD3-216ENST00000573936 IER5Q5VY09 327 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 LRRC8DQ7L1W4 858 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 TPH2Q8IWU9 490 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 ZNF710Q8N1W2 664 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 ATXN2LQ8WWM7 1075 aaKnown RBP12.34□□□□□ -0.43
CHD3-216ENST00000573936 ZNF396Q96N95 335 aaPredicted RBP12.34□□□□□ -0.43
CHD3-216ENST00000573936 LXNQ9BS40 222 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 WNT8AQ9H1J5 351 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 IL23AQ9NPF7 189 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 RGL1Q9NZL6 768 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 UMODL1Q5DID0 1318 aa12.34□□□□□ -0.43
CHD3-216ENST00000573936 ZBTB42B2RXF5 422 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 M0QZ92 97 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 STBD1O95210 358 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 F13A1P00488 732 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 CSF2RAP15509 400 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 RPA1P27694 616 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 YWHABP31946 246 aaKnown RBP12.33□□□□□ -0.44
CHD3-216ENST00000573936 CYP4A11Q02928 519 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 TBC1D8BQ0IIM8 1120 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 CTTNQ14247 550 aaKnown RBP12.33□□□□□ -0.44
CHD3-216ENST00000573936 TARBP2Q15633 366 aaKnown RBP12.33□□□□□ -0.44
CHD3-216ENST00000573936 MTERF2Q49AM1 385 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 FAM26DQ5JW98 314 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 ZNF618Q5T7W0 954 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 KRT79Q5XKE5 535 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 ATL3Q6DD88 541 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 PSRC1Q6PGN9 363 aaPredicted RBP12.33□□□□□ -0.44
CHD3-216ENST00000573936 RUFY4Q6ZNE9 571 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 IGSF22Q8N9C0 903 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 TRAPPC12Q8WVT3 735 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 SCLYQ96I15 445 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 CEP170P1Q96L14 293 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 TSPYL2Q9H2G4 693 aaPredicted RBP12.33□□□□□ -0.44
CHD3-216ENST00000573936 ANKEF1Q9NU02 776 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 DAXXQ9UER7 740 aaPredicted RBP12.33□□□□□ -0.44
CHD3-216ENST00000573936 MSRAQ9UJ68 235 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 MYO9BQ13459 2157 aa12.33□□□□□ -0.44
CHD3-216ENST00000573936 SLC26A4O43511 780 aa12.32□□□□□ -0.44
CHD3-216ENST00000573936 GAS2O43903 313 aaKnown RBP12.32□□□□□ -0.44
CHD3-216ENST00000573936 C22orf31O95567 290 aa12.32□□□□□ -0.44
CHD3-216ENST00000573936 FGBP02675 491 aa12.32□□□□□ -0.44
CHD3-216ENST00000573936 ACRP10323 421 aa12.32□□□□□ -0.44
CHD3-216ENST00000573936 IGFBP4P22692 258 aa12.32□□□□□ -0.44
CHD3-216ENST00000573936 CCT6AP40227 531 aaKnown RBP12.32□□□□□ -0.44
CHD3-216ENST00000573936 RFC5P40937 340 aa12.32□□□□□ -0.44
CHD3-216ENST00000573936 DNM2P50570 870 aa12.32□□□□□ -0.44
CHD3-216ENST00000573936 MRPS5P82675 430 aaKnown RBP12.32□□□□□ -0.44
CHD3-216ENST00000573936 CDC42EP1Q00587 391 aa12.32□□□□□ -0.44
CHD3-216ENST00000573936 CCDC85BQ15834 202 aaPredicted RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms