RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CNBD1Q8NA66 436 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 LRRN4CLQ8ND94 238 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 C1orf131Q8NDD1 294 aaKnown RBP7.31□□□□□ -1.24
VPS53-212ENST00000572259 ADCY4Q8NFM4 1077 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 CXorf38Q8TB03 319 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 BRF1Q92994 677 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 HSPA12BQ96MM6 686 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 BRIP1Q9BX63 1249 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 STK31Q9BXU1 1019 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 CHST7Q9NS84 486 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 PRR13Q9NZ81 148 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 ZIM2Q9NZV7 527 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 ZSWIM5Q9P217 1185 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 ZC3H7BQ9UGR2 993 aaKnown RBP7.31□□□□□ -1.24
VPS53-212ENST00000572259 U3KQE9 123 aa7.31□□□□□ -1.24
VPS53-212ENST00000572259 GOLGA6CA6NDK9 693 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 GOLGA6BA6NDN3 693 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 MEIS1O00470 390 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 SIGLEC6O43699 453 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 DDX58O95786 925 aaKnown RBP7.3□□□□□ -1.24
VPS53-212ENST00000572259 LDHCP07864 332 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 FAM163BP0C2L3 166 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 GOLGA6DP0CG33 693 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 MYCLP1P12525 358 aaPredicted RBP7.3□□□□□ -1.24
VPS53-212ENST00000572259 DPEP1P16444 411 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 CASP2P42575 452 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 RAB27AP51159 221 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 CLCN7P51798 805 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 ZNF445P59923 1031 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 SSRP1Q08945 709 aaKnown RBP7.3□□□□□ -1.24
VPS53-212ENST00000572259 AIMP1Q12904 312 aaKnown RBP7.3□□□□□ -1.24
VPS53-212ENST00000572259 PARP10Q53GL7 1025 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 NXNQ6DKJ4 435 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 SLC4A10Q6U841 1118 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 COPS6Q7L5N1 327 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 SPACA3Q8IXA5 215 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 NIM1KQ8IY84 436 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 TCEAL8Q8IYN2 117 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 NINJ1Q92982 152 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 GPR62Q9BZJ7 368 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 NOL6Q9H6R4 1146 aaKnown RBP7.3□□□□□ -1.24
VPS53-212ENST00000572259 GOLGA6AQ9NYA3 693 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 SUSD2Q9UGT4 822 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 PFDN2Q9UHV9 154 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 PLAGL2Q9UPG8 496 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 AKT3Q9Y243 479 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 DIS3Q9Y2L1 958 aaKnown RBP7.3□□□□□ -1.24
VPS53-212ENST00000572259 SF3B6Q9Y3B4 125 aaKnown RBP7.3□□□□□ -1.24
VPS53-212ENST00000572259 SNX11Q9Y5W9 270 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 ST14Q9Y5Y6 855 aa7.3□□□□□ -1.24
VPS53-212ENST00000572259 N4BP2Q86UW6 1770 aaPredicted RBP7.3□□□□□ -1.24
VPS53-212ENST00000572259 UTRNP46939 3433 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 C10orf71Q711Q0 1435 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 ELL2O00472 640 aaPredicted RBP7.29□□□□□ -1.24
VPS53-212ENST00000572259 SHOXO15266 292 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 AKAP10O43572 662 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 PRAMEF1O95521 474 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 MYL3P08590 195 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 IFIT2P09913 472 aaKnown RBP7.29□□□□□ -1.24
VPS53-212ENST00000572259 HOXA10P31260 410 aaPredicted RBP7.29□□□□□ -1.24
VPS53-212ENST00000572259 GUCY2FP51841 1108 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 KCTD2Q14681 263 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 PPP2R5DQ14738 602 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 SLC10A6Q3KNW5 377 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 CCDC70Q6NSX1 233 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 TTLL7Q6ZT98 887 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 C2CD5Q86YS7 1000 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 SPICE1Q8N0Z3 855 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 CRACR2BQ8N4Y2 399 aaPredicted RBP7.29□□□□□ -1.24
VPS53-212ENST00000572259 FIBCD1Q8N539 461 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 TTLL6Q8N841 843 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 UBE2FQ969M7 185 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 ZNF622Q969S3 477 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS53-212ENST00000572259 ZNF669Q96BR6 464 aaPredicted RBP7.29□□□□□ -1.24
VPS53-212ENST00000572259 ASPSCR1Q9BZE9 553 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 CDH19Q9H159 772 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 DUSP15Q9H1R2 295 aaPredicted RBP7.29□□□□□ -1.24
VPS53-212ENST00000572259 PPCSQ9HAB8 311 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 FHOD1Q9Y613 1164 aa7.29□□□□□ -1.24
VPS53-212ENST00000572259 SCN7AQ01118 1682 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 KDM2BQ8NHM5 1336 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 BCORQ6W2J9 1755 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 SSU72P8A0A1W2PR75 194 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 SHISA3A0PJX4 238 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 COBLO75128 1261 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 YBX3P16989 372 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS53-212ENST00000572259 TPP2P29144 1249 aaPredicted RBP7.28□□□□□ -1.24
VPS53-212ENST00000572259 ALDH1B1P30837 517 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 PURAQ00577 322 aaKnown RBP7.28□□□□□ -1.24
VPS53-212ENST00000572259 PIN1Q13526 163 aaPredicted RBP7.28□□□□□ -1.24
VPS53-212ENST00000572259 HLFQ16534 295 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 KRT24Q2M2I5 525 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 TWISTNBQ3B726 338 aaPredicted RBP7.28□□□□□ -1.24
VPS53-212ENST00000572259 CWF19L1Q69YN2 538 aaKnown RBP7.28□□□□□ -1.24
VPS53-212ENST00000572259 PRR5LQ6MZQ0 368 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 POMZP3Q6PJE2 187 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 SPATC1Q76KD6 591 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 THAP5Q7Z6K1 395 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 DGKHQ86XP1 1220 aa7.28□□□□□ -1.24
VPS53-212ENST00000572259 STK11IPQ8N1F8 1099 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms