RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 ZBTB42B2RXF5 422 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 TBX10O75333 385 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 CSPG5O95196 566 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 ITGB1P05556 798 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 ATP4AP20648 1035 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 DNAJB1P25685 340 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 GTF2F1P35269 517 aaKnown RBP eCLIP16.96■□□□□ 0.31
CLN3-236ENST00000568558 GATMP50440 423 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 FGD1P98174 961 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 NFX1Q12986 1120 aaKnown RBP16.96■□□□□ 0.31
CLN3-236ENST00000568558 ZNF484Q5JVG2 852 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 MIS18BP1Q6P0N0 1132 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 PDXDC2PQ6P474 469 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 Q6ZUG5 572 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 KIAA0319LQ8IZA0 1049 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 REXO1Q8N1G1 1221 aaKnown RBP16.96■□□□□ 0.31
CLN3-236ENST00000568558 TMEM40Q8WWA1 233 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 KCNB2Q92953 911 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 ZMYND12Q9H0C1 365 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 CDHR5Q9HBB8 845 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 ERVK-5Q9HDB9 667 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 GINS2Q9Y248 185 aa16.96■□□□□ 0.31
CLN3-236ENST00000568558 NOC2LQ9Y3T9 749 aaKnown RBP16.96■□□□□ 0.31
CLN3-236ENST00000568558 C19orf67A6NJJ6 358 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 LINC01565O15544 149 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 MGEA5O60502 916 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 RPS6KA5O75582 802 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 ALADP13716 330 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 SARSP49591 514 aaKnown RBP16.95■□□□□ 0.3
CLN3-236ENST00000568558 SETQ01105 290 aaPredicted RBP16.95■□□□□ 0.3
CLN3-236ENST00000568558 SMAD2Q15796 467 aaKnown RBP16.95■□□□□ 0.3
CLN3-236ENST00000568558 PKN1Q16512 942 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 MCTP2Q6DN12 878 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 SWSAP1Q6NVH7 229 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 FAM43BQ6ZT52 329 aaPredicted RBP16.95■□□□□ 0.3
CLN3-236ENST00000568558 ADHFE1Q8IWW8 467 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 KLHL23Q8NBE8 558 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 SPPL3Q8TCT6 385 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 CCDC12Q8WUD4 166 aaPredicted RBP16.95■□□□□ 0.3
CLN3-236ENST00000568558 BRF1Q92994 677 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 UIMC1Q96RL1 719 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 ZNF577Q9BSK1 485 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 C6orf50Q9HD87 102 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 TBC1D22BQ9NU19 505 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 LRFN2Q9ULH4 789 aa16.95■□□□□ 0.3
CLN3-236ENST00000568558 PRR33A8MZF0 331 aa16.94■□□□□ 0.3
CLN3-236ENST00000568558 MBTPS2O43462 519 aa16.94■□□□□ 0.3
CLN3-236ENST00000568558 C22orf31O95567 290 aa16.94■□□□□ 0.3
CLN3-236ENST00000568558 CLUL1Q15846 466 aa16.94■□□□□ 0.3
CLN3-236ENST00000568558 ZNF746Q6NUN9 644 aaPredicted RBP16.94■□□□□ 0.3
CLN3-236ENST00000568558 BBXQ8WY36 941 aaPredicted RBP16.94■□□□□ 0.3
CLN3-236ENST00000568558 JAKMIP1Q96N16 626 aaKnown RBP16.94■□□□□ 0.3
CLN3-236ENST00000568558 IGFLR1Q9H665 355 aa16.94■□□□□ 0.3
CLN3-236ENST00000568558 MAFBQ9Y5Q3 323 aaPredicted RBP16.94■□□□□ 0.3
CLN3-236ENST00000568558 SNX14Q9Y5W7 946 aa16.94■□□□□ 0.3
CLN3-236ENST00000568558 PRPF3O43395 683 aaKnown RBP16.93■□□□□ 0.3
CLN3-236ENST00000568558 DCXO43602 365 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 IBSPP21815 317 aaPredicted RBP16.93■□□□□ 0.3
CLN3-236ENST00000568558 GNA11P29992 359 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 HSPA4P34932 840 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 IRS1P35568 1242 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 ADAM15Q13444 863 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 SMAD4Q13485 552 aaKnown RBP16.93■□□□□ 0.3
CLN3-236ENST00000568558 ODR4Q5SWX8 454 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 BLOC1S2Q6QNY1 142 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 ADGRD2Q7Z7M1 963 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 CKAP2LQ8IYA6 745 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 SMAP1Q8IYB5 467 aaPredicted RBP16.93■□□□□ 0.3
CLN3-236ENST00000568558 POF1BQ8WVV4 589 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 PPP2R3CQ969Q6 453 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 ADAM2Q99965 735 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 AGXT2Q9BYV1 514 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 RGS18Q9NS28 235 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 C1orf112Q9NSG2 853 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 ST3GAL5Q9UNP4 418 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 PCDHB7Q9Y5E2 793 aa16.93■□□□□ 0.3
CLN3-236ENST00000568558 DENND3A2RUS2 1198 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 C9IYK1 514 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 GPR182O15218 404 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 CIITAP33076 1130 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 CRYBB1P53674 252 aaPredicted RBP16.92■□□□□ 0.3
CLN3-236ENST00000568558 KIZQ2M2Z5 673 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 PRR16Q569H4 304 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 SLC24A5Q71RS6 500 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 FAM228AQ86W67 206 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 FBXL16Q8N461 479 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 RASGRP4Q8TDF6 673 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 PHKBQ93100 1093 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 PPP1R16BQ96T49 567 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 OSMRQ99650 979 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 RNF216Q9NWF9 866 aaPredicted RBP16.92■□□□□ 0.3
CLN3-236ENST00000568558 CD207Q9UJ71 328 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 PCDHA10Q9Y5I2 948 aa16.92■□□□□ 0.3
CLN3-236ENST00000568558 MUC6Q6W4X9 2439 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 VTNP04004 478 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 PSAPP07602 524 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 RPS6KB1P23443 525 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 NDUFV1P49821 464 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 NTRK3Q16288 839 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 FAM102BQ5T8I3 360 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms