RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 IGSF9BQ9UPX0 1349 aa16.96■□□□□ 0.3
VPS39-210ENST00000568357 MYO9BQ13459 2157 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 REV3LO60673 3130 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 TANC1Q9C0D5 1861 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 XIRP2A4UGR9 3374 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 SMIM35A0A1B0GVV1 85 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 WNT7AO00755 349 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 ST18O60284 1047 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 KCNJ6P48051 423 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 JAK3P52333 1124 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 MRPS6P82932 125 aaKnown RBP16.95■□□□□ 0.3
VPS39-210ENST00000568357 TMEM62Q0P6H9 643 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 KIAA0319LQ8IZA0 1049 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 SEPT8Q92599 483 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 C8orf76Q96K31 380 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 FAM20AQ96MK3 541 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 VAV3Q9UKW4 847 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 CDY2AQ9Y6F7 541 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 CHD9Q3L8U1 2897 aa16.95■□□□□ 0.3
VPS39-210ENST00000568357 COL1A2P08123 1366 aa16.94■□□□□ 0.3
VPS39-210ENST00000568357 EML1O00423 815 aa16.94■□□□□ 0.3
VPS39-210ENST00000568357 STBD1O95210 358 aa16.94■□□□□ 0.3
VPS39-210ENST00000568357 GHRP10912 638 aa16.94■□□□□ 0.3
VPS39-210ENST00000568357 IGFBP4P22692 258 aa16.94■□□□□ 0.3
VPS39-210ENST00000568357 HMGN5P82970 282 aaKnown RBP16.94■□□□□ 0.3
VPS39-210ENST00000568357 LPIN1Q14693 890 aa16.94■□□□□ 0.3
VPS39-210ENST00000568357 FBXO18Q8NFZ0 1043 aa16.94■□□□□ 0.3
VPS39-210ENST00000568357 RDM1Q8NG50 284 aa16.94■□□□□ 0.3
VPS39-210ENST00000568357 NAP1L4Q99733 375 aaKnown RBP16.94■□□□□ 0.3
VPS39-210ENST00000568357 LRFN3Q9BTN0 628 aa16.94■□□□□ 0.3
VPS39-210ENST00000568357 HCN4Q9Y3Q4 1203 aa16.94■□□□□ 0.3
VPS39-210ENST00000568357 GTF3C3Q9Y5Q9 886 aa16.94■□□□□ 0.3
VPS39-210ENST00000568357 TBX3O15119 743 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 EFCAB14O75071 495 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 C22orf31O95567 290 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 OATP04181 439 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 PRKCEQ02156 737 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 PPP2R5CQ13362 524 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 FBXO47Q5MNV8 452 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 IER5Q5VY09 327 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 NME8Q8N427 588 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 TMX3Q96JJ7 454 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 BACH2Q9BYV9 841 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 IFIH1Q9BYX4 1025 aaKnown RBP16.93■□□□□ 0.3
VPS39-210ENST00000568357 AGO3Q9H9G7 860 aaKnown RBP16.93■□□□□ 0.3
VPS39-210ENST00000568357 SLC28A3Q9HAS3 691 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 NRBP2Q9NSY0 501 aa16.93■□□□□ 0.3
VPS39-210ENST00000568357 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.92■□□□□ 0.3
VPS39-210ENST00000568357 ARHGEF15O94989 841 aa16.92■□□□□ 0.3
VPS39-210ENST00000568357 RPLP2P05387 115 aaKnown RBP16.92■□□□□ 0.3
VPS39-210ENST00000568357 CA3P07451 260 aa16.92■□□□□ 0.3
VPS39-210ENST00000568357 BMP1P13497 986 aa16.92■□□□□ 0.3
VPS39-210ENST00000568357 TFF2Q03403 129 aa16.92■□□□□ 0.3
VPS39-210ENST00000568357 SAFBQ15424 915 aaKnown RBP eCLIP16.92■□□□□ 0.3
VPS39-210ENST00000568357 FAM184AQ8NB25 1140 aa16.92■□□□□ 0.3
VPS39-210ENST00000568357 BANK1Q8NDB2 785 aa16.92■□□□□ 0.3
VPS39-210ENST00000568357 FAM167AQ96KS9 214 aa16.92■□□□□ 0.3
VPS39-210ENST00000568357 CELF4Q9BZC1 486 aaKnown RBP16.92■□□□□ 0.3
VPS39-210ENST00000568357 EPHX3Q9H6B9 360 aa16.92■□□□□ 0.3
VPS39-210ENST00000568357 CDHR5Q9HBB8 845 aa16.92■□□□□ 0.3
VPS39-210ENST00000568357 TMEM150BA6NC51 233 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 KIF28PB7ZC32 967 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 TLL1O43897 1013 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 MARCH6O60337 910 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 GJB5O95377 273 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 ATP2B1P20020 1258 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 KCNQ1P51787 676 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 SPIRE1Q08AE8 756 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 PPP2R2DQ66LE6 453 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 FAM117BQ6P1L5 589 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 METTL13Q8N6R0 699 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 APBB2Q92870 758 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 ZBED2Q9BTP6 218 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 NIFKQ9BYG3 293 aaKnown RBP16.91■□□□□ 0.3
VPS39-210ENST00000568357 CEP131Q9UPN4 1083 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 ARIH1Q9Y4X5 557 aaPredicted RBP16.91■□□□□ 0.3
VPS39-210ENST00000568357 TRPV2Q9Y5S1 764 aa16.91■□□□□ 0.3
VPS39-210ENST00000568357 LCHNA4D1U4 455 aa16.9■□□□□ 0.3
VPS39-210ENST00000568357 AMHP03971 560 aa16.9■□□□□ 0.3
VPS39-210ENST00000568357 CD52P31358 61 aa16.9■□□□□ 0.3
VPS39-210ENST00000568357 TARBP2Q15633 366 aaKnown RBP16.9■□□□□ 0.3
VPS39-210ENST00000568357 TSHZ1Q6ZSZ6 1077 aa16.9■□□□□ 0.3
VPS39-210ENST00000568357 SLFN12Q8IYM2 578 aa16.9■□□□□ 0.3
VPS39-210ENST00000568357 LINC01465Q8N7H1 131 aa16.9■□□□□ 0.3
VPS39-210ENST00000568357 MTMR9Q96QG7 549 aa16.9■□□□□ 0.3
VPS39-210ENST00000568357 CEP89Q96ST8 783 aa16.9■□□□□ 0.3
VPS39-210ENST00000568357 SH2D3AQ9BRG2 576 aa16.9■□□□□ 0.3
VPS39-210ENST00000568357 FOXP1Q9H334 677 aaPredicted RBP16.9■□□□□ 0.3
VPS39-210ENST00000568357 SQORQ9Y6N5 450 aa16.9■□□□□ 0.3
VPS39-210ENST00000568357 KDM3AQ9Y4C1 1321 aa16.9■□□□□ 0.3
VPS39-210ENST00000568357 DDX11L8A8MPP1 907 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 M0QZ92 97 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 ENPP3O14638 875 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 MAGEB2O15479 319 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 BAG4O95429 457 aaKnown RBP16.89■□□□□ 0.29
VPS39-210ENST00000568357 CLCN3P51790 818 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 PSMC5P62195 406 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 TAP1Q03518 808 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 EPHA7Q15375 998 aa16.89■□□□□ 0.29
VPS39-210ENST00000568357 CALCRLQ16602 461 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms