RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 TNFRSF25Q93038 417 aa21.07■□□□□ 0.96
CLN3-227ENST00000567495 CHD9Q3L8U1 2897 aa21.07■□□□□ 0.96
CLN3-227ENST00000567495 ZNF862O60290 1169 aa21.06■□□□□ 0.96
CLN3-227ENST00000567495 DKC1O60832 514 aaKnown RBP eCLIP21.06■□□□□ 0.96
CLN3-227ENST00000567495 DTNBO60941 627 aa21.06■□□□□ 0.96
CLN3-227ENST00000567495 BAG4O95429 457 aaKnown RBP21.06■□□□□ 0.96
CLN3-227ENST00000567495 HTRA4P83105 476 aaPredicted RBP21.06■□□□□ 0.96
CLN3-227ENST00000567495 ST3GAL1Q11201 340 aa21.06■□□□□ 0.96
CLN3-227ENST00000567495 NR5A1Q13285 461 aa21.06■□□□□ 0.96
CLN3-227ENST00000567495 XKR3Q5GH77 459 aa21.06■□□□□ 0.96
CLN3-227ENST00000567495 KRT40Q6A162 431 aa21.06■□□□□ 0.96
CLN3-227ENST00000567495 TMCO2Q7Z6W1 182 aaPredicted RBP21.06■□□□□ 0.96
CLN3-227ENST00000567495 CCDC83Q8IWF9 413 aa21.06■□□□□ 0.96
CLN3-227ENST00000567495 DIS3L2Q8IYB7 885 aaKnown RBP21.06■□□□□ 0.96
CLN3-227ENST00000567495 SLFN12Q8IYM2 578 aa21.06■□□□□ 0.96
CLN3-227ENST00000567495 METTL13Q8N6R0 699 aa21.06■□□□□ 0.96
CLN3-227ENST00000567495 GJA10Q969M2 543 aa21.06■□□□□ 0.96
CLN3-227ENST00000567495 MYO9BQ13459 2157 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.05■□□□□ 0.96
CLN3-227ENST00000567495 ST18O60284 1047 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 IGFBP4P22692 258 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 PSMC5P62195 406 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 TMEM62Q0P6H9 643 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 PAK2Q13177 524 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 ADGRE1Q14246 886 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 FAM117BQ6P1L5 589 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 TRMT1LQ7Z2T5 733 aaKnown RBP21.05■□□□□ 0.96
CLN3-227ENST00000567495 ARNTL2Q8WYA1 636 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 TGS1Q96RS0 853 aaKnown RBP21.05■□□□□ 0.96
CLN3-227ENST00000567495 MAP7D2Q96T17 732 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 YME1L1Q96TA2 773 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 NIFKQ9BYG3 293 aaKnown RBP21.05■□□□□ 0.96
CLN3-227ENST00000567495 AGO3Q9H9G7 860 aaKnown RBP21.05■□□□□ 0.96
CLN3-227ENST00000567495 CDH23Q9H251 3354 aa21.05■□□□□ 0.96
CLN3-227ENST00000567495 BTBD18B2RXH4 712 aa21.04■□□□□ 0.96
CLN3-227ENST00000567495 ENPP3O14638 875 aa21.04■□□□□ 0.96
CLN3-227ENST00000567495 GTPBP6O43824 516 aaPredicted RBP21.04■□□□□ 0.96
CLN3-227ENST00000567495 POU3F3P20264 500 aaPredicted RBP21.04■□□□□ 0.96
CLN3-227ENST00000567495 CD52P31358 61 aa21.04■□□□□ 0.96
CLN3-227ENST00000567495 CRYBB1P53674 252 aaPredicted RBP21.04■□□□□ 0.96
CLN3-227ENST00000567495 ERVK-21P61565 698 aa21.04■□□□□ 0.96
CLN3-227ENST00000567495 EARS2Q5JPH6 523 aaKnown RBP21.04■□□□□ 0.96
CLN3-227ENST00000567495 SP7Q8TDD2 431 aaPredicted RBP21.04■□□□□ 0.96
CLN3-227ENST00000567495 C8orf76Q96K31 380 aa21.04■□□□□ 0.96
CLN3-227ENST00000567495 VAV3Q9UKW4 847 aa21.04■□□□□ 0.96
CLN3-227ENST00000567495 PADI3Q9ULW8 664 aa21.04■□□□□ 0.96
CLN3-227ENST00000567495 LCHNA4D1U4 455 aa21.03■□□□□ 0.96
CLN3-227ENST00000567495 LINC01553A4QN01 128 aa21.03■□□□□ 0.96
CLN3-227ENST00000567495 CDC42EP1Q00587 391 aa21.03■□□□□ 0.96
CLN3-227ENST00000567495 TBC1D8BQ0IIM8 1120 aa21.03■□□□□ 0.96
CLN3-227ENST00000567495 TARBP2Q15633 366 aaKnown RBP21.03■□□□□ 0.96
CLN3-227ENST00000567495 UGCGQ16739 394 aa21.03■□□□□ 0.96
CLN3-227ENST00000567495 EFCAB12Q6NXP0 572 aa21.03■□□□□ 0.96
CLN3-227ENST00000567495 HAS1Q92839 578 aa21.03■□□□□ 0.96
CLN3-227ENST00000567495 SAMD11Q96NU1 681 aa21.03■□□□□ 0.96
CLN3-227ENST00000567495 RNF216Q9NWF9 866 aaPredicted RBP21.03■□□□□ 0.96
CLN3-227ENST00000567495 GINS2Q9Y248 185 aa21.03■□□□□ 0.96
CLN3-227ENST00000567495 GPR182O15218 404 aa21.02■□□□□ 0.96
CLN3-227ENST00000567495 ARHGEF15O94989 841 aa21.02■□□□□ 0.96
CLN3-227ENST00000567495 UPP2O95045 317 aa21.02■□□□□ 0.96
CLN3-227ENST00000567495 P4HBP07237 508 aaKnown RBP21.02■□□□□ 0.96
CLN3-227ENST00000567495 QARSP47897 775 aaKnown RBP21.02■□□□□ 0.96
CLN3-227ENST00000567495 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.02■□□□□ 0.96
CLN3-227ENST00000567495 FAM184AQ8NB25 1140 aa21.02■□□□□ 0.96
CLN3-227ENST00000567495 JPH2Q9BR39 696 aaPredicted RBP21.02■□□□□ 0.96
CLN3-227ENST00000567495 TSPYL2Q9H2G4 693 aaPredicted RBP21.02■□□□□ 0.96
CLN3-227ENST00000567495 CERS4Q9HA82 394 aa21.02■□□□□ 0.96
CLN3-227ENST00000567495 KIF3AQ9Y496 699 aa21.02■□□□□ 0.96
CLN3-227ENST00000567495 PPME1Q9Y570 386 aa21.02■□□□□ 0.96
CLN3-227ENST00000567495 RPS6KA5O75582 802 aa21.01■□□□□ 0.95
CLN3-227ENST00000567495 EPHA7Q15375 998 aa21.01■□□□□ 0.95
CLN3-227ENST00000567495 POTEDQ86YR6 584 aa21.01■□□□□ 0.95
CLN3-227ENST00000567495 EXOC8Q8IYI6 725 aa21.01■□□□□ 0.95
CLN3-227ENST00000567495 LINC01465Q8N7H1 131 aa21.01■□□□□ 0.95
CLN3-227ENST00000567495 FBXO18Q8NFZ0 1043 aa21.01■□□□□ 0.95
CLN3-227ENST00000567495 FOXP1Q9H334 677 aaPredicted RBP21.01■□□□□ 0.95
CLN3-227ENST00000567495 SEPT9Q9UHD8 586 aaPredicted RBP21.01■□□□□ 0.95
CLN3-227ENST00000567495 AKT3Q9Y243 479 aa21.01■□□□□ 0.95
CLN3-227ENST00000567495 CHD7Q9P2D1 2997 aa21■□□□□ 0.95
CLN3-227ENST00000567495 FAM205CA6NFA0 338 aa21■□□□□ 0.95
CLN3-227ENST00000567495 DDX11L8A8MPP1 907 aa21■□□□□ 0.95
CLN3-227ENST00000567495 EML1O00423 815 aa21■□□□□ 0.95
CLN3-227ENST00000567495 GPR32O75388 356 aa21■□□□□ 0.95
CLN3-227ENST00000567495 STBD1O95210 358 aa21■□□□□ 0.95
CLN3-227ENST00000567495 MCM2P49736 904 aa21■□□□□ 0.95
CLN3-227ENST00000567495 DNM2P50570 870 aa21■□□□□ 0.95
CLN3-227ENST00000567495 CLCN3P51790 818 aa21■□□□□ 0.95
CLN3-227ENST00000567495 FOSBP53539 338 aa21■□□□□ 0.95
CLN3-227ENST00000567495 NFX1Q12986 1120 aaKnown RBP21■□□□□ 0.95
CLN3-227ENST00000567495 CALCRLQ16602 461 aa21■□□□□ 0.95
CLN3-227ENST00000567495 KIZQ2M2Z5 673 aa21■□□□□ 0.95
CLN3-227ENST00000567495 SUGCTQ9HAC7 445 aa21■□□□□ 0.95
CLN3-227ENST00000567495 LMCD1Q9NZU5 365 aa21■□□□□ 0.95
CLN3-227ENST00000567495 NEMFO60524 1076 aa20.99■□□□□ 0.95
CLN3-227ENST00000567495 VTNP04004 478 aa20.99■□□□□ 0.95
CLN3-227ENST00000567495 STAG3L1P0CL83 205 aa20.99■□□□□ 0.95
CLN3-227ENST00000567495 ORC2Q13416 577 aaPredicted RBP20.99■□□□□ 0.95
CLN3-227ENST00000567495 NPAS4Q8IUM7 802 aa20.99■□□□□ 0.95
CLN3-227ENST00000567495 BANK1Q8NDB2 785 aa20.99■□□□□ 0.95
CLN3-227ENST00000567495 ERVK-5Q9HDB9 667 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms